Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J0S entry

There are 4 chains in PDB entry 9J0S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	ALA 483
B	SER 2	ALA 483
C	ASP 3	ALA 483
D	SER 4	HIS 482

There are 62 helices in PDB entry 9J0S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	66	Right-handed alpha
Helix 2	AA2	A	67	85	Right-handed alpha
Helix 3	AA3	A	85	98	Right-handed alpha
Helix 4	AA4	A	100	125	Right-handed alpha
Helix 5	AA5	A	157	172	Right-handed alpha
Helix 6	AA6	A	184	189	Right-handed alpha
Helix 7	AA7	A	189	200	Right-handed alpha
Helix 8	AA8	A	212	223	Right-handed alpha
Helix 9	AA9	A	234	248	Right-handed alpha
Helix 10	AB1	A	271	284	Right-handed alpha
Helix 11	AB2	A	301	318	Right-handed alpha
Helix 12	AB3	A	335	353	Right-handed alpha
Helix 13	AB4	A	379	384	Right-handed alpha
Helix 14	AB5	A	398	408	Right-handed alpha
Helix 15	AB6	A	421	432	Right-handed alpha
Helix 16	AB7	A	464	472	Right-handed alpha
Helix 17	AB8	B	45	66	Right-handed alpha
Helix 18	AB9	B	67	85	Right-handed alpha
Helix 19	AC1	B	85	98	Right-handed alpha
Helix 20	AC2	B	100	125	Right-handed alpha
Helix 21	AC3	B	157	172	Right-handed alpha
Helix 22	AC4	B	189	200	Right-handed alpha
Helix 23	AC5	B	215	223	Right-handed alpha
Helix 24	AC6	B	234	248	Right-handed alpha
Helix 25	AC7	B	271	285	Right-handed alpha
Helix 26	AC8	B	301	318	Right-handed alpha
Helix 27	AC9	B	335	353	Right-handed alpha
Helix 28	AD1	B	379	384	Right-handed alpha
Helix 29	AD2	B	398	409	Right-handed alpha
Helix 30	AD3	B	421	432	Right-handed alpha
Helix 31	AD4	B	464	472	Right-handed alpha
Helix 32	AD5	C	45	66	Right-handed alpha
Helix 33	AD6	C	67	85	Right-handed alpha
Helix 34	AD7	C	85	98	Right-handed alpha
Helix 35	AD8	C	100	125	Right-handed alpha
Helix 36	AD9	C	157	172	Right-handed alpha
Helix 37	AE1	C	184	189	Right-handed alpha
Helix 38	AE2	C	189	200	Right-handed alpha
Helix 39	AE3	C	215	223	Right-handed alpha
Helix 40	AE4	C	234	248	Right-handed alpha
Helix 41	AE5	C	271	284	Right-handed alpha
Helix 42	AE6	C	301	318	Right-handed alpha
Helix 43	AE7	C	335	353	Right-handed alpha
Helix 44	AE8	C	379	384	Right-handed alpha
Helix 45	AE9	C	398	409	Right-handed alpha
Helix 46	AF1	C	421	431	Right-handed alpha
Helix 47	AF2	C	465	472	Right-handed alpha
Helix 48	AF3	D	45	66	Right-handed alpha
Helix 49	AF4	D	67	85	Right-handed alpha
Helix 50	AF5	D	85	98	Right-handed alpha
Helix 51	AF6	D	100	125	Right-handed alpha
Helix 52	AF7	D	157	172	Right-handed alpha
Helix 53	AF8	D	189	199	Right-handed alpha
Helix 54	AF9	D	212	223	Right-handed alpha
Helix 55	AG1	D	234	248	Right-handed alpha
Helix 56	AG2	D	271	284	Right-handed alpha
Helix 57	AG3	D	301	318	Right-handed alpha
Helix 58	AG4	D	335	353	Right-handed alpha
Helix 59	AG5	D	379	384	Right-handed alpha
Helix 60	AG6	D	398	408	Right-handed alpha
Helix 61	AG7	D	421	431	Right-handed alpha
Helix 62	AG8	D	465	472	Right-handed alpha

There are 18 sheets in PDB entry 9J0S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	17	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	30	first strand
Strand 2	A	37	42	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	359	first strand
Strand 2	B	370	375	anti-parallel
Strand 3	B	390	396	parallel
Strand 4	B	296	300	parallel
Strand 5	B	263	266	parallel
Strand 6	B	416	418	parallel
Strand 7	B	436	439	parallel
Strand 8	A	473	481	parallel
Strand 9	A	137	145	anti-parallel
Strand 10	A	126	131	anti-parallel
Strand 11	C	126	130	anti-parallel
Strand 12	C	137	145	anti-parallel
Strand 13	C	473	481	anti-parallel
Strand 14	D	436	439	parallel
Strand 15	D	414	418	parallel
Strand 16	D	263	266	parallel
Strand 17	D	296	300	parallel
Strand 18	D	390	396	parallel
Strand 19	D	370	375	parallel
Strand 20	D	355	359	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	175	179	parallel
Strand 3	A	148	152	parallel
Strand 4	A	228	233	parallel
Strand 5	A	253	258	parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	358	first strand
Strand 2	A	370	375	anti-parallel
Strand 3	A	390	396	parallel
Strand 4	A	296	300	parallel
Strand 5	A	263	266	parallel
Strand 6	A	414	418	parallel
Strand 7	A	436	439	parallel
Strand 8	B	473	481	parallel
Strand 9	B	137	145	anti-parallel
Strand 10	B	126	130	anti-parallel
Strand 11	D	126	130	anti-parallel
Strand 12	D	137	145	anti-parallel
Strand 13	D	473	481	anti-parallel
Strand 14	C	436	439	parallel
Strand 15	C	414	418	parallel
Strand 16	C	263	266	parallel
Strand 17	C	296	300	parallel
Strand 18	C	390	396	parallel
Strand 19	C	370	375	parallel
Strand 20	C	355	359	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	366	367	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	17	19	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	30	first strand
Strand 2	B	37	42	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	175	179	parallel
Strand 3	B	148	152	parallel
Strand 4	B	228	233	parallel
Strand 5	B	253	258	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	366	367	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	30	first strand
Strand 2	C	37	42	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	175	179	parallel
Strand 3	C	148	152	parallel
Strand 4	C	228	233	parallel
Strand 5	C	253	258	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	366	367	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	17	19	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	30	first strand
Strand 2	D	37	42	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	175	179	parallel
Strand 3	D	148	152	parallel
Strand 4	D	228	233	parallel
Strand 5	D	253	258	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	363	first strand
Strand 2	D	366	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J0S

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0S