Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J0V entry

There are 2 chains in PDB entry 9J0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 31ILE 136
A
 THR 138LEU 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9J0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 62Right-handed alpha
Helix 2
AA2
A
68 84Right-handed alpha
Helix 3
AA3
A
114 121Right-handed alpha
Helix 4
AA4
A
143 155Right-handed alpha
Helix 5
AA5
A
189 193Right-handed 310
Helix 6
AA6
A
196 209Right-handed alpha
Helix 7
AA7
A
219 224Right-handed 310
Helix 8
AA8
A
250 253Right-handed 310
Helix 9
AA9
A
254 276Right-handed alpha
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There are 3 sheets in PDB entry 9J0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
32 40anti-parallel
Strand 3
A
88 97anti-parallel
Strand 4
A
100 108anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
185 187parallel
Strand 3
A
174 180anti-parallel
Strand 4
A
168 171anti-parallel
Strand 5
A
158 162anti-parallel
Strand 6
A
122 128parallel
Strand 7
A
237 244parallel
Strand 8
A
247 248anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
185 187parallel
Strand 3
A
174 180anti-parallel
Strand 4
A
226 233anti-parallel
Strand 5
A
237 244anti-parallel
Strand 6
A
247 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il