Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J0W entry

There are 4 chains in PDB entry 9J0W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	PHE 489
B	PRO 13	TYR 487
C	ASP 3	PRO 488
D	SER 4	PRO 488

There are 66 helices in PDB entry 9J0W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	66	Right-handed alpha
Helix 2	AA2	A	67	85	Right-handed alpha
Helix 3	AA3	A	85	98	Right-handed alpha
Helix 4	AA4	A	100	120	Right-handed alpha
Helix 5	AA5	A	120	125	Right-handed alpha
Helix 6	AA6	A	157	172	Right-handed alpha
Helix 7	AA7	A	189	199	Right-handed alpha
Helix 8	AA8	A	212	223	Right-handed alpha
Helix 9	AA9	A	234	248	Right-handed alpha
Helix 10	AB1	A	271	285	Right-handed alpha
Helix 11	AB2	A	286	289	Right-handed 310
Helix 12	AB3	A	301	317	Right-handed alpha
Helix 13	AB4	A	335	352	Right-handed alpha
Helix 14	AB5	A	379	384	Right-handed alpha
Helix 15	AB6	A	398	407	Right-handed alpha
Helix 16	AB7	A	421	431	Right-handed alpha
Helix 17	AB8	A	464	472	Right-handed alpha
Helix 18	AB9	B	45	66	Right-handed alpha
Helix 19	AC1	B	67	85	Right-handed alpha
Helix 20	AC2	B	85	98	Right-handed alpha
Helix 21	AC3	B	100	125	Right-handed alpha
Helix 22	AC4	B	157	172	Right-handed alpha
Helix 23	AC5	B	189	200	Right-handed alpha
Helix 24	AC6	B	212	223	Right-handed alpha
Helix 25	AC7	B	234	248	Right-handed alpha
Helix 26	AC8	B	271	285	Right-handed alpha
Helix 27	AC9	B	286	289	Right-handed 310
Helix 28	AD1	B	301	318	Right-handed alpha
Helix 29	AD2	B	335	349	Right-handed alpha
Helix 30	AD3	B	379	384	Right-handed alpha
Helix 31	AD4	B	398	408	Right-handed alpha
Helix 32	AD5	B	421	432	Right-handed alpha
Helix 33	AD6	B	464	472	Right-handed alpha
Helix 34	AD7	C	45	66	Right-handed alpha
Helix 35	AD8	C	67	85	Right-handed alpha
Helix 36	AD9	C	85	98	Right-handed alpha
Helix 37	AE1	C	100	125	Right-handed alpha
Helix 38	AE2	C	157	172	Right-handed alpha
Helix 39	AE3	C	185	188	Right-handed 310
Helix 40	AE4	C	189	200	Right-handed alpha
Helix 41	AE5	C	212	223	Right-handed alpha
Helix 42	AE6	C	234	248	Right-handed alpha
Helix 43	AE7	C	271	284	Right-handed alpha
Helix 44	AE8	C	301	318	Right-handed alpha
Helix 45	AE9	C	335	353	Right-handed alpha
Helix 46	AF1	C	379	384	Right-handed alpha
Helix 47	AF2	C	398	408	Right-handed alpha
Helix 48	AF3	C	421	432	Right-handed alpha
Helix 49	AF4	C	464	472	Right-handed alpha
Helix 50	AF5	D	45	66	Right-handed alpha
Helix 51	AF6	D	67	85	Right-handed alpha
Helix 52	AF7	D	85	98	Right-handed alpha
Helix 53	AF8	D	100	120	Right-handed alpha
Helix 54	AF9	D	120	125	Right-handed alpha
Helix 55	AG1	D	157	172	Right-handed alpha
Helix 56	AG2	D	189	199	Right-handed alpha
Helix 57	AG3	D	212	223	Right-handed alpha
Helix 58	AG4	D	234	248	Right-handed alpha
Helix 59	AG5	D	271	285	Right-handed alpha
Helix 60	AG6	D	286	289	Right-handed 310
Helix 61	AG7	D	301	318	Right-handed alpha
Helix 62	AG8	D	335	353	Right-handed alpha
Helix 63	AG9	D	379	384	Right-handed alpha
Helix 64	AH1	D	398	408	Right-handed alpha
Helix 65	AH2	D	421	432	Right-handed alpha
Helix 66	AH3	D	464	472	Right-handed alpha

There are 19 sheets in PDB entry 9J0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	17	19	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	30	first strand
Strand 2	A	37	42	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	358	first strand
Strand 2	B	370	375	anti-parallel
Strand 3	B	390	396	parallel
Strand 4	B	294	300	parallel
Strand 5	B	262	266	parallel
Strand 6	B	416	418	parallel
Strand 7	B	436	439	parallel
Strand 8	C	473	481	parallel
Strand 9	C	137	145	anti-parallel
Strand 10	C	126	131	anti-parallel
Strand 11	A	126	130	anti-parallel
Strand 12	A	137	145	anti-parallel
Strand 13	A	473	481	anti-parallel
Strand 14	D	436	439	parallel
Strand 15	D	414	418	parallel
Strand 16	D	262	266	parallel
Strand 17	D	294	300	parallel
Strand 18	D	390	396	parallel
Strand 19	D	370	375	parallel
Strand 20	D	355	359	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	175	179	parallel
Strand 3	A	148	152	parallel
Strand 4	A	228	233	parallel
Strand 5	A	253	258	parallel
Strand 6	A	459	460	anti-parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	370	375	anti-parallel
Strand 3	A	390	396	parallel
Strand 4	A	294	300	parallel
Strand 5	A	262	266	parallel
Strand 6	A	416	418	parallel
Strand 7	A	436	439	parallel
Strand 8	D	473	481	parallel
Strand 9	D	137	145	anti-parallel
Strand 10	D	126	130	anti-parallel
Strand 11	B	126	131	anti-parallel
Strand 12	B	137	145	anti-parallel
Strand 13	B	473	481	anti-parallel
Strand 14	C	436	439	parallel
Strand 15	C	414	418	parallel
Strand 16	C	262	266	parallel
Strand 17	C	294	300	parallel
Strand 18	C	390	396	parallel
Strand 19	C	370	373	parallel
Strand 20	C	355	359	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	366	367	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	A	455	456	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	30	first strand
Strand 2	B	37	42	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	175	179	parallel
Strand 3	B	148	152	parallel
Strand 4	B	228	233	parallel
Strand 5	B	253	258	parallel
Strand 6	B	459	460	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	363	first strand
Strand 2	B	366	367	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	17	19	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	30	first strand
Strand 2	C	37	42	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	208	first strand
Strand 2	C	175	179	parallel
Strand 3	C	148	152	parallel
Strand 4	C	228	233	parallel
Strand 5	C	253	258	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	363	first strand
Strand 2	C	366	367	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	17	19	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	30	first strand
Strand 2	D	37	42	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	175	179	parallel
Strand 3	D	148	152	parallel
Strand 4	D	228	233	parallel
Strand 5	D	253	258	parallel
Strand 6	D	459	460	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	363	first strand
Strand 2	D	366	367	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	412	first strand
Strand 2	D	455	456	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J0W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0W