Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J0X entry

There are 4 chains in PDB entry 9J0X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 52	GLN 720
B	GLU 33	GLN 720
C	ASN 52	GLN 720
D	GLU 33	GLN 720

There are147 helices in PDB entry 9J0X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	79	Right-handed alpha
Helix 2	AA2	A	82	89	Right-handed alpha
Helix 3	AA3	A	97	103	Right-handed alpha
Helix 4	AA4	A	108	115	Right-handed alpha
Helix 5	AA5	A	116	118	Right-handed 310
Helix 6	AA6	A	131	140	Right-handed alpha
Helix 7	AA7	A	143	149	Right-handed alpha
Helix 8	AA8	A	150	152	Right-handed 310
Helix 9	AA9	A	153	160	Right-handed alpha
Helix 10	AB1	A	168	176	Right-handed 310
Helix 11	AB2	A	178	190	Right-handed alpha
Helix 12	AB3	A	203	225	Right-handed alpha
Helix 13	AB4	A	227	234	Right-handed 310
Helix 14	AB5	A	248	252	Right-handed 310
Helix 15	AB6	A	253	270	Right-handed alpha
Helix 16	AB7	A	282	312	Right-handed alpha
Helix 17	AB8	A	314	333	Right-handed alpha
Helix 18	AB9	A	337	354	Right-handed alpha
Helix 19	AC1	A	355	361	Right-handed 310
Helix 20	AC2	A	368	377	Right-handed alpha
Helix 21	AC3	A	377	383	Right-handed alpha
Helix 22	AC4	A	391	401	Right-handed alpha
Helix 23	AC5	A	456	461	Right-handed alpha
Helix 24	AC6	A	481	492	Right-handed alpha
Helix 25	AC7	A	492	507	Right-handed alpha
Helix 26	AC8	A	518	541	Right-handed alpha
Helix 27	AC9	A	543	552	Right-handed alpha
Helix 28	AD1	A	566	574	Right-handed alpha
Helix 29	AD2	A	576	587	Right-handed alpha
Helix 30	AD3	A	599	608	Right-handed alpha
Helix 31	AD4	A	609	618	Right-handed alpha
Helix 32	AD5	A	627	639	Right-handed alpha
Helix 33	AD6	A	640	648	Right-handed alpha
Helix 34	AD7	A	663	669	Right-handed alpha
Helix 35	AD8	A	673	681	Right-handed alpha
Helix 36	AD9	A	696	703	Right-handed alpha
Helix 37	AE1	A	709	715	Right-handed 310
Helix 38	AE2	B	46	50	Right-handed 310
Helix 39	AE3	B	65	89	Right-handed alpha
Helix 40	AE4	B	97	115	Right-handed alpha
Helix 41	AE5	B	116	118	Right-handed 310
Helix 42	AE6	B	144	149	Right-handed alpha
Helix 43	AE7	B	150	152	Right-handed 310
Helix 44	AE8	B	155	161	Right-handed alpha
Helix 45	AE9	B	164	177	Right-handed 310
Helix 46	AF1	B	178	183	Right-handed alpha
Helix 47	AF2	B	195	209	Right-handed alpha
Helix 48	AF3	B	212	225	Right-handed alpha
Helix 49	AF4	B	230	234	Right-handed 310
Helix 50	AF5	B	248	252	Right-handed 310
Helix 51	AF6	B	253	270	Right-handed alpha
Helix 52	AF7	B	281	312	Right-handed alpha
Helix 53	AF8	B	314	328	Right-handed alpha
Helix 54	AF9	B	336	351	Right-handed alpha
Helix 55	AG1	B	357	362	Right-handed alpha
Helix 56	AG2	B	365	377	Right-handed alpha
Helix 57	AG3	B	377	382	Right-handed alpha
Helix 58	AG4	B	391	401	Right-handed alpha
Helix 59	AG5	B	483	492	Right-handed alpha
Helix 60	AG6	B	492	505	Right-handed alpha
Helix 61	AG7	B	530	542	Right-handed alpha
Helix 62	AG8	B	543	552	Right-handed alpha
Helix 63	AG9	B	579	583	Right-handed 310
Helix 64	AH1	B	599	607	Right-handed alpha
Helix 65	AH2	B	611	616	Right-handed alpha
Helix 66	AH3	B	617	620	Right-handed 310
Helix 67	AH4	B	627	639	Right-handed alpha
Helix 68	AH5	B	640	650	Right-handed alpha
Helix 69	AH6	B	663	669	Right-handed alpha
Helix 70	AH7	B	677	683	Right-handed alpha
Helix 71	AH8	B	696	701	Right-handed alpha
Helix 72	AH9	B	709	718	Right-handed alpha
Helix 73	AI1	C	65	70	Right-handed alpha
Helix 74	AI2	C	71	82	Right-handed alpha
Helix 75	AI3	C	82	88	Right-handed alpha
Helix 76	AI4	C	94	96	Right-handed 310
Helix 77	AI5	C	97	103	Right-handed alpha
Helix 78	AI6	C	109	115	Right-handed alpha
Helix 79	AI7	C	131	143	Right-handed alpha
Helix 80	AI8	C	143	149	Right-handed alpha
Helix 81	AI9	C	150	152	Right-handed 310
Helix 82	AJ1	C	155	161	Right-handed alpha
Helix 83	AJ2	C	168	176	Right-handed 310
Helix 84	AJ3	C	177	188	Right-handed alpha
Helix 85	AJ4	C	206	225	Right-handed alpha
Helix 86	AJ5	C	227	231	Right-handed 310
Helix 87	AJ6	C	248	252	Right-handed 310
Helix 88	AJ7	C	253	270	Right-handed alpha
Helix 89	AJ8	C	282	312	Right-handed alpha
Helix 90	AJ9	C	314	323	Right-handed alpha
Helix 91	AK1	C	324	333	Right-handed alpha
Helix 92	AK2	C	338	353	Right-handed alpha
Helix 93	AK3	C	354	357	Right-handed 310
Helix 94	AK4	C	358	362	Right-handed 310
Helix 95	AK5	C	368	377	Right-handed alpha
Helix 96	AK6	C	377	383	Right-handed alpha
Helix 97	AK7	C	391	399	Right-handed alpha
Helix 98	AK8	C	400	402	Right-handed 310
Helix 99	AK9	C	481	492	Right-handed alpha
Helix 100	AL1	C	492	507	Right-handed alpha
Helix 101	AL2	C	518	541	Right-handed alpha
Helix 102	AL3	C	543	552	Right-handed alpha
Helix 103	AL4	C	566	574	Right-handed alpha
Helix 104	AL5	C	576	587	Right-handed alpha
Helix 105	AL6	C	599	608	Right-handed alpha
Helix 106	AL7	C	609	617	Right-handed alpha
Helix 107	AL8	C	627	638	Right-handed alpha
Helix 108	AL9	C	640	648	Right-handed alpha
Helix 109	AM1	C	663	672	Right-handed alpha
Helix 110	AM2	C	673	682	Right-handed alpha
Helix 111	AM3	C	696	705	Right-handed alpha
Helix 112	AM4	C	706	712	Right-handed alpha
Helix 113	AM5	C	713	718	Right-handed alpha
Helix 114	AM6	D	70	89	Right-handed alpha
Helix 115	AM7	D	98	115	Right-handed alpha
Helix 116	AM8	D	116	118	Right-handed 310
Helix 117	AM9	D	155	160	Right-handed alpha
Helix 118	AN1	D	168	177	Right-handed 310
Helix 119	AN2	D	178	185	Right-handed alpha
Helix 120	AN3	D	195	209	Right-handed alpha
Helix 121	AN4	D	212	221	Right-handed alpha
Helix 122	AN5	D	227	234	Right-handed 310
Helix 123	AN6	D	248	252	Right-handed 310
Helix 124	AN7	D	253	270	Right-handed alpha
Helix 125	AN8	D	282	312	Right-handed alpha
Helix 126	AN9	D	314	319	Right-handed alpha
Helix 127	AO1	D	319	324	Right-handed alpha
Helix 128	AO2	D	338	345	Right-handed alpha
Helix 129	AO3	D	365	377	Right-handed alpha
Helix 130	AO4	D	377	382	Right-handed alpha
Helix 131	AO5	D	391	399	Right-handed alpha
Helix 132	AO6	D	483	492	Right-handed alpha
Helix 133	AO7	D	492	502	Right-handed alpha
Helix 134	AO8	D	504	508	Right-handed 310
Helix 135	AO9	D	529	542	Right-handed alpha
Helix 136	AP1	D	545	554	Right-handed alpha
Helix 137	AP2	D	566	573	Right-handed alpha
Helix 138	AP3	D	579	584	Right-handed 310
Helix 139	AP4	D	601	608	Right-handed alpha
Helix 140	AP5	D	609	616	Right-handed alpha
Helix 141	AP6	D	617	619	Right-handed 310
Helix 142	AP7	D	627	639	Right-handed alpha
Helix 143	AP8	D	641	650	Right-handed alpha
Helix 144	AP9	D	663	672	Right-handed alpha
Helix 145	AQ1	D	676	683	Right-handed alpha
Helix 146	AQ2	D	696	705	Right-handed alpha
Helix 147	AQ3	D	713	718	Right-handed alpha

There are 16 sheets in PDB entry 9J0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	128	129	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	244	245	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	478	479	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	468	470	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	442	448	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	426	first strand
Strand 2	A	452	454	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	B	244	245	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	407	first strand
Strand 2	B	475	481	anti-parallel
Strand 3	B	422	426	anti-parallel
Strand 4	B	452	454	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	446	first strand
Strand 2	B	430	435	anti-parallel
Strand 3	B	468	473	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	128	129	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	244	245	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	478	479	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	448	first strand
Strand 2	C	431	436	anti-parallel
Strand 3	C	468	470	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	128	129	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	241	first strand
Strand 2	D	244	245	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	407	first strand
Strand 2	D	475	481	anti-parallel
Strand 3	D	422	425	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	414	first strand
Strand 2	D	469	473	anti-parallel
Strand 3	D	430	436	anti-parallel
Strand 4	D	442	448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J0X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0X