Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J0Y entry

There are 4 chains in PDB entry 9J0Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 52LEU 376
B
 ASN 52LEU 376
C
 ASN 52LEU 376
D
 ASN 52LEU 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 9J0Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 70Right-handed alpha
Helix 2
AA2
A
71 79Right-handed alpha
Helix 3
AA3
A
81 88Right-handed alpha
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
99 107Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
144 149Right-handed alpha
Helix 8
AA8
A
153 160Right-handed alpha
Helix 9
AA9
A
164 170Right-handed 310
Helix 10
AB1
A
171 177Right-handed 310
Helix 11
AB2
A
178 189Right-handed alpha
Helix 12
AB3
A
202 225Right-handed alpha
Helix 13
AB4
A
227 234Right-handed 310
Helix 14
AB5
A
248 252Right-handed 310
Helix 15
AB6
A
253 270Right-handed alpha
Helix 16
AB7
A
283 299Right-handed alpha
Helix 17
AB8
A
299 312Right-handed alpha
Helix 18
AB9
A
314 329Right-handed alpha
Helix 19
AC1
A
330 333Right-handed 310
Helix 20
AC2
A
336 350Right-handed alpha
Helix 21
AC3
A
353 361Right-handed alpha
Helix 22
AC4
A
368 376Right-handed alpha
Helix 23
AC5
B
70 89Right-handed alpha
Helix 24
AC6
B
98 104Right-handed alpha
Helix 25
AC7
B
107 115Right-handed alpha
Helix 26
AC8
B
116 118Right-handed 310
Helix 27
AC9
B
135 143Right-handed alpha
Helix 28
AD1
B
144 149Right-handed alpha
Helix 29
AD2
B
155 160Right-handed alpha
Helix 30
AD3
B
165 177Right-handed 310
Helix 31
AD4
B
178 190Right-handed alpha
Helix 32
AD5
B
197 200Right-handed 310
Helix 33
AD6
B
201 225Right-handed alpha
Helix 34
AD7
B
230 234Right-handed 310
Helix 35
AD8
B
253 270Right-handed alpha
Helix 36
AD9
B
281 311Right-handed alpha
Helix 37
AE1
B
314 331Right-handed alpha
Helix 38
AE2
B
338 351Right-handed alpha
Helix 39
AE3
B
357 362Right-handed 310
Helix 40
AE4
B
366 376Right-handed alpha
Helix 41
AE5
C
65 70Right-handed alpha
Helix 42
AE6
C
71 74Right-handed 310
Helix 43
AE7
C
77 88Right-handed alpha
Helix 44
AE8
C
94 96Right-handed 310
Helix 45
AE9
C
97 103Right-handed alpha
Helix 46
AF1
C
109 115Right-handed alpha
Helix 47
AF2
C
131 143Right-handed alpha
Helix 48
AF3
C
148 152Right-handed 310
Helix 49
AF4
C
153 161Right-handed alpha
Helix 50
AF5
C
164 177Right-handed 310
Helix 51
AF6
C
178 190Right-handed alpha
Helix 52
AF7
C
195 225Right-handed alpha
Helix 53
AF8
C
253 270Right-handed alpha
Helix 54
AF9
C
282 311Right-handed alpha
Helix 55
AG1
C
314 323Right-handed alpha
Helix 56
AG2
C
323 331Right-handed alpha
Helix 57
AG3
C
341 352Right-handed alpha
Helix 58
AG4
C
358 363Right-handed 310
Helix 59
AG5
C
368 376Right-handed alpha
Helix 60
AG6
D
74 89Right-handed alpha
Helix 61
AG7
D
98 113Right-handed alpha
Helix 62
AG8
D
144 149Right-handed alpha
Helix 63
AG9
D
150 152Right-handed 310
Helix 64
AH1
D
153 160Right-handed alpha
Helix 65
AH2
D
164 176Right-handed 310
Helix 66
AH3
D
177 187Right-handed alpha
Helix 67
AH4
D
202 225Right-handed alpha
Helix 68
AH5
D
253 270Right-handed alpha
Helix 69
AH6
D
282 312Right-handed alpha
Helix 70
AH7
D
314 331Right-handed alpha
Helix 71
AH8
D
336 338Right-handed 310
Helix 72
AH9
D
339 350Right-handed alpha
Helix 73
AI1
D
366 376Right-handed alpha
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There are 6 sheets in PDB entry 9J0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
244 245anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
128 129anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
244 245anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 241first strand
Strand 2
C
244 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 121first strand
Strand 2
D
128 129anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
240 241first strand
Strand 2
D
244 245anti-parallel
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