Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J0Z entry

There are 4 chains in PDB entry 9J0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 51	GLU 505
B	ASN 52	GLU 506
C	ASN 52	GLU 505
D	ASN 52	GLU 506

There are 87 helices in PDB entry 9J0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	90	Right-handed alpha
Helix 2	AA2	A	97	106	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	131	140	Right-handed alpha
Helix 5	AA5	A	144	149	Right-handed alpha
Helix 6	AA6	A	155	160	Right-handed alpha
Helix 7	AA7	A	169	176	Right-handed 310
Helix 8	AA8	A	178	183	Right-handed alpha
Helix 9	AA9	A	206	222	Right-handed alpha
Helix 10	AB1	A	248	252	Right-handed 310
Helix 11	AB2	A	253	270	Right-handed alpha
Helix 12	AB3	A	282	309	Right-handed alpha
Helix 13	AB4	A	314	332	Right-handed alpha
Helix 14	AB5	A	336	363	Right-handed alpha
Helix 15	AB6	A	368	382	Right-handed alpha
Helix 16	AB7	A	391	402	Right-handed alpha
Helix 17	AB8	A	456	461	Right-handed alpha
Helix 18	AB9	A	482	492	Right-handed alpha
Helix 19	AC1	A	492	505	Right-handed alpha
Helix 20	AC2	B	71	82	Right-handed alpha
Helix 21	AC3	B	82	89	Right-handed alpha
Helix 22	AC4	B	97	103	Right-handed alpha
Helix 23	AC5	B	103	108	Right-handed alpha
Helix 24	AC6	B	148	152	Right-handed 310
Helix 25	AC7	B	153	161	Right-handed alpha
Helix 26	AC8	B	164	176	Right-handed 310
Helix 27	AC9	B	178	183	Right-handed alpha
Helix 28	AD1	B	195	203	Right-handed alpha
Helix 29	AD2	B	203	208	Right-handed alpha
Helix 30	AD3	B	210	222	Right-handed alpha
Helix 31	AD4	B	227	234	Right-handed 310
Helix 32	AD5	B	248	252	Right-handed 310
Helix 33	AD6	B	253	270	Right-handed alpha
Helix 34	AD7	B	281	311	Right-handed alpha
Helix 35	AD8	B	314	324	Right-handed alpha
Helix 36	AD9	B	336	351	Right-handed alpha
Helix 37	AE1	B	356	360	Right-handed 310
Helix 38	AE2	B	365	370	Right-handed alpha
Helix 39	AE3	B	371	376	Right-handed alpha
Helix 40	AE4	B	376	383	Right-handed alpha
Helix 41	AE5	B	391	399	Right-handed alpha
Helix 42	AE6	B	483	492	Right-handed alpha
Helix 43	AE7	B	492	504	Right-handed alpha
Helix 44	AE8	C	74	82	Right-handed alpha
Helix 45	AE9	C	82	89	Right-handed alpha
Helix 46	AF1	C	94	96	Right-handed 310
Helix 47	AF2	C	97	108	Right-handed alpha
Helix 48	AF3	C	131	136	Right-handed alpha
Helix 49	AF4	C	138	143	Right-handed alpha
Helix 50	AF5	C	144	149	Right-handed alpha
Helix 51	AF6	C	150	152	Right-handed 310
Helix 52	AF7	C	155	160	Right-handed alpha
Helix 53	AF8	C	164	177	Right-handed 310
Helix 54	AF9	C	178	183	Right-handed alpha
Helix 55	AG1	C	198	222	Right-handed alpha
Helix 56	AG2	C	230	234	Right-handed 310
Helix 57	AG3	C	248	252	Right-handed 310
Helix 58	AG4	C	253	270	Right-handed alpha
Helix 59	AG5	C	281	312	Right-handed alpha
Helix 60	AG6	C	315	318	Right-handed 310
Helix 61	AG7	C	319	331	Right-handed alpha
Helix 62	AG8	C	337	347	Right-handed alpha
Helix 63	AG9	C	351	356	Right-handed alpha
Helix 64	AH1	C	357	359	Right-handed 310
Helix 65	AH2	C	368	376	Right-handed alpha
Helix 66	AH3	C	376	382	Right-handed alpha
Helix 67	AH4	C	391	399	Right-handed alpha
Helix 68	AH5	C	483	492	Right-handed alpha
Helix 69	AH6	C	493	501	Right-handed alpha
Helix 70	AH7	D	74	82	Right-handed alpha
Helix 71	AH8	D	82	90	Right-handed alpha
Helix 72	AH9	D	98	114	Right-handed alpha
Helix 73	AI1	D	144	148	Right-handed 310
Helix 74	AI2	D	166	177	Right-handed 310
Helix 75	AI3	D	178	185	Right-handed alpha
Helix 76	AI4	D	206	224	Right-handed alpha
Helix 77	AI5	D	230	234	Right-handed 310
Helix 78	AI6	D	253	270	Right-handed alpha
Helix 79	AI7	D	281	312	Right-handed alpha
Helix 80	AI8	D	316	321	Right-handed alpha
Helix 81	AI9	D	321	334	Right-handed alpha
Helix 82	AJ1	D	338	345	Right-handed alpha
Helix 83	AJ2	D	357	362	Right-handed alpha
Helix 84	AJ3	D	365	383	Right-handed alpha
Helix 85	AJ4	D	391	399	Right-handed alpha
Helix 86	AJ5	D	483	492	Right-handed alpha
Helix 87	AJ6	D	492	501	Right-handed alpha

There are 15 sheets in PDB entry 9J0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	244	245	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	478	481	anti-parallel
Strand 3	A	422	425	anti-parallel
Strand 4	A	453	454	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	434	first strand
Strand 2	A	468	470	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	128	129	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	B	244	245	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	404	first strand
Strand 2	B	478	481	anti-parallel
Strand 3	B	422	425	anti-parallel
Strand 4	B	453	454	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	468	471	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	128	129	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	244	245	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	407	first strand
Strand 2	C	475	481	anti-parallel
Strand 3	C	422	425	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	C	468	473	anti-parallel
Strand 3	C	430	434	anti-parallel
Strand 4	C	446	448	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	128	129	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	241	first strand
Strand 2	D	244	245	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	407	first strand
Strand 2	D	475	481	anti-parallel
Strand 3	D	422	426	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	448	first strand
Strand 2	D	430	434	anti-parallel
Strand 3	D	468	473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J0Z