Analysis of interatomic Contacts of Structural Units in PDB entry:
9J10

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J10 entry

There are 4 chains in PDB entry 9J10 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 48	ASN 502
B	THR 48	ASN 502
C	THR 48	ASN 502
D	THR 48	ASN 502

There are100 helices in PDB entry 9J10. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	90	Right-handed alpha
Helix 2	AA2	A	94	96	Right-handed 310
Helix 3	AA3	A	97	115	Right-handed alpha
Helix 4	AA4	A	116	118	Right-handed 310
Helix 5	AA5	A	131	143	Right-handed alpha
Helix 6	AA6	A	143	150	Right-handed alpha
Helix 7	AA7	A	153	160	Right-handed alpha
Helix 8	AA8	A	164	177	Right-handed 310
Helix 9	AA9	A	178	191	Right-handed alpha
Helix 10	AB1	A	195	222	Right-handed alpha
Helix 11	AB2	A	223	226	Right-handed 310
Helix 12	AB3	A	227	234	Right-handed 310
Helix 13	AB4	A	248	252	Right-handed 310
Helix 14	AB5	A	253	270	Right-handed alpha
Helix 15	AB6	A	281	312	Right-handed alpha
Helix 16	AB7	A	315	333	Right-handed alpha
Helix 17	AB8	A	337	351	Right-handed alpha
Helix 18	AB9	A	354	360	Right-handed alpha
Helix 19	AC1	A	367	377	Right-handed alpha
Helix 20	AC2	A	378	381	Right-handed 310
Helix 21	AC3	A	384	388	Right-handed 310
Helix 22	AC4	A	391	396	Right-handed alpha
Helix 23	AC5	A	397	402	Right-handed 310
Helix 24	AC6	A	481	490	Right-handed alpha
Helix 25	AC7	A	493	500	Right-handed alpha
Helix 26	AC8	B	64	90	Right-handed alpha
Helix 27	AC9	B	94	96	Right-handed 310
Helix 28	AD1	B	97	115	Right-handed alpha
Helix 29	AD2	B	116	118	Right-handed 310
Helix 30	AD3	B	131	143	Right-handed alpha
Helix 31	AD4	B	143	150	Right-handed alpha
Helix 32	AD5	B	153	160	Right-handed alpha
Helix 33	AD6	B	164	177	Right-handed 310
Helix 34	AD7	B	178	191	Right-handed alpha
Helix 35	AD8	B	195	222	Right-handed alpha
Helix 36	AD9	B	223	226	Right-handed 310
Helix 37	AE1	B	227	234	Right-handed 310
Helix 38	AE2	B	248	252	Right-handed 310
Helix 39	AE3	B	253	270	Right-handed alpha
Helix 40	AE4	B	281	312	Right-handed alpha
Helix 41	AE5	B	315	333	Right-handed alpha
Helix 42	AE6	B	337	351	Right-handed alpha
Helix 43	AE7	B	354	360	Right-handed alpha
Helix 44	AE8	B	367	377	Right-handed alpha
Helix 45	AE9	B	378	381	Right-handed 310
Helix 46	AF1	B	384	388	Right-handed 310
Helix 47	AF2	B	391	396	Right-handed alpha
Helix 48	AF3	B	397	402	Right-handed 310
Helix 49	AF4	B	481	490	Right-handed alpha
Helix 50	AF5	B	493	500	Right-handed alpha
Helix 51	AF6	C	64	90	Right-handed alpha
Helix 52	AF7	C	94	96	Right-handed 310
Helix 53	AF8	C	97	115	Right-handed alpha
Helix 54	AF9	C	116	118	Right-handed 310
Helix 55	AG1	C	131	143	Right-handed alpha
Helix 56	AG2	C	143	150	Right-handed alpha
Helix 57	AG3	C	153	160	Right-handed alpha
Helix 58	AG4	C	164	177	Right-handed 310
Helix 59	AG5	C	178	191	Right-handed alpha
Helix 60	AG6	C	195	222	Right-handed alpha
Helix 61	AG7	C	223	226	Right-handed 310
Helix 62	AG8	C	227	234	Right-handed 310
Helix 63	AG9	C	248	252	Right-handed 310
Helix 64	AH1	C	253	270	Right-handed alpha
Helix 65	AH2	C	281	312	Right-handed alpha
Helix 66	AH3	C	315	333	Right-handed alpha
Helix 67	AH4	C	337	351	Right-handed alpha
Helix 68	AH5	C	354	360	Right-handed alpha
Helix 69	AH6	C	367	377	Right-handed alpha
Helix 70	AH7	C	378	381	Right-handed 310
Helix 71	AH8	C	384	388	Right-handed 310
Helix 72	AH9	C	391	396	Right-handed alpha
Helix 73	AI1	C	397	402	Right-handed 310
Helix 74	AI2	C	481	490	Right-handed alpha
Helix 75	AI3	C	493	500	Right-handed alpha
Helix 76	AI4	D	64	90	Right-handed alpha
Helix 77	AI5	D	94	96	Right-handed 310
Helix 78	AI6	D	97	115	Right-handed alpha
Helix 79	AI7	D	116	118	Right-handed 310
Helix 80	AI8	D	131	143	Right-handed alpha
Helix 81	AI9	D	143	150	Right-handed alpha
Helix 82	AJ1	D	153	160	Right-handed alpha
Helix 83	AJ2	D	164	177	Right-handed 310
Helix 84	AJ3	D	178	191	Right-handed alpha
Helix 85	AJ4	D	195	222	Right-handed alpha
Helix 86	AJ5	D	223	226	Right-handed 310
Helix 87	AJ6	D	227	234	Right-handed 310
Helix 88	AJ7	D	248	252	Right-handed 310
Helix 89	AJ8	D	253	270	Right-handed alpha
Helix 90	AJ9	D	281	312	Right-handed alpha
Helix 91	AK1	D	315	333	Right-handed alpha
Helix 92	AK2	D	337	351	Right-handed alpha
Helix 93	AK3	D	354	360	Right-handed alpha
Helix 94	AK4	D	367	377	Right-handed alpha
Helix 95	AK5	D	378	381	Right-handed 310
Helix 96	AK6	D	384	388	Right-handed 310
Helix 97	AK7	D	391	396	Right-handed alpha
Helix 98	AK8	D	397	402	Right-handed 310
Helix 99	AK9	D	481	490	Right-handed alpha
Helix 100	AL1	D	493	500	Right-handed alpha

There are 16 sheets in PDB entry 9J10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	128	129	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	244	245	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	407	first strand
Strand 2	A	475	478	anti-parallel
Strand 3	A	424	428	anti-parallel
Strand 4	A	453	454	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	446	448	first strand
Strand 2	A	431	434	anti-parallel
Strand 3	A	468	470	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	121	first strand
Strand 2	B	128	129	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	241	first strand
Strand 2	B	244	245	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	475	478	anti-parallel
Strand 3	B	424	428	anti-parallel
Strand 4	B	453	454	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	446	448	first strand
Strand 2	B	431	434	anti-parallel
Strand 3	B	468	470	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	128	129	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	241	first strand
Strand 2	C	244	245	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	475	478	anti-parallel
Strand 3	C	424	428	anti-parallel
Strand 4	C	453	454	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	446	448	first strand
Strand 2	C	431	434	anti-parallel
Strand 3	C	468	470	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	121	first strand
Strand 2	D	128	129	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	241	first strand
Strand 2	D	244	245	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	407	first strand
Strand 2	D	475	478	anti-parallel
Strand 3	D	424	428	anti-parallel
Strand 4	D	453	454	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	448	first strand
Strand 2	D	431	434	anti-parallel
Strand 3	D	468	470	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J10

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J10