Analysis of interatomic Contacts of Structural Units in PDB entry:
9J12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J12 entry

There are 2 chains in PDB entry 9J12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5LEU 507
B
 LYS 5ASN 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 9J12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 24Right-handed alpha
Helix 2
AA2
A
25 31Right-handed alpha
Helix 3
AA3
A
39 54Right-handed alpha
Helix 4
AA4
A
56 68Right-handed alpha
Helix 5
AA5
A
73 78Right-handed alpha
Helix 6
AA6
A
97 129Right-handed alpha
Helix 7
AA7
A
140 145Right-handed alpha
Helix 8
AA8
A
158 180Right-handed alpha
Helix 9
AA9
A
180 187Right-handed alpha
Helix 10
AB1
A
190 209Right-handed alpha
Helix 11
AB2
A
251 268Right-handed alpha
Helix 12
AB3
A
273 286Right-handed alpha
Helix 13
AB4
A
298 309Right-handed alpha
Helix 14
AB5
A
327 330Right-handed 310
Helix 15
AB6
A
331 360Right-handed alpha
Helix 16
AB7
A
370 389Right-handed alpha
Helix 17
AB8
A
399 404Right-handed alpha
Helix 18
AB9
A
411 426Right-handed alpha
Helix 19
AC1
A
427 430Right-handed 310
Helix 20
AC2
A
438 449Right-handed alpha
Helix 21
AC3
A
450 451Right-handed 310
Helix 22
AC4
A
452 456Right-handed 310
Helix 23
AC5
A
461 478Right-handed alpha
Helix 24
AC6
A
480 495Right-handed alpha
Helix 25
AC7
A
495 505Right-handed alpha
Helix 26
AC8
B
6 25Right-handed alpha
Helix 27
AC9
B
25 31Right-handed alpha
Helix 28
AD1
B
34 38Right-handed 310
Helix 29
AD2
B
40 55Right-handed alpha
Helix 30
AD3
B
59 66Right-handed alpha
Helix 31
AD4
B
73 77Right-handed 310
Helix 32
AD5
B
86 91Right-handed alpha
Helix 33
AD6
B
95 128Right-handed alpha
Helix 34
AD7
B
140 147Right-handed alpha
Helix 35
AD8
B
158 178Right-handed alpha
Helix 36
AD9
B
182 187Right-handed alpha
Helix 37
AE1
B
190 208Right-handed alpha
Helix 38
AE2
B
209 211Right-handed 310
Helix 39
AE3
B
249 267Right-handed alpha
Helix 40
AE4
B
275 285Right-handed alpha
Helix 41
AE5
B
298 309Right-handed alpha
Helix 42
AE6
B
332 358Right-handed alpha
Helix 43
AE7
B
371 385Right-handed alpha
Helix 44
AE8
B
399 404Right-handed alpha
Helix 45
AE9
B
410 424Right-handed alpha
Helix 46
AF1
B
425 430Right-handed 310
Helix 47
AF2
B
437 450Right-handed alpha
Helix 48
AF3
B
460 474Right-handed alpha
Helix 49
AF4
B
480 507Right-handed alpha
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There are 3 sheets in PDB entry 9J12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
242 244anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
394 395anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
228 229anti-parallel
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