Analysis of interatomic Contacts of Structural Units in PDB entry:
9J13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J13 entry

There are 2 chains in PDB entry 9J13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5ASN 508
B
 LYS 5ASN 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9J13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 24Right-handed alpha
Helix 2
AA2
A
25 31Right-handed alpha
Helix 3
AA3
A
39 55Right-handed alpha
Helix 4
AA4
A
59 66Right-handed alpha
Helix 5
AA5
A
67 69Right-handed 310
Helix 6
AA6
A
86 91Right-handed alpha
Helix 7
AA7
A
95 129Right-handed alpha
Helix 8
AA8
A
139 147Right-handed alpha
Helix 9
AA9
A
158 178Right-handed alpha
Helix 10
AB1
A
182 187Right-handed alpha
Helix 11
AB2
A
190 208Right-handed alpha
Helix 12
AB3
A
249 267Right-handed alpha
Helix 13
AB4
A
273 285Right-handed alpha
Helix 14
AB5
A
298 304Right-handed alpha
Helix 15
AB6
A
332 352Right-handed alpha
Helix 16
AB7
A
354 358Right-handed 310
Helix 17
AB8
A
370 387Right-handed alpha
Helix 18
AB9
A
399 404Right-handed alpha
Helix 19
AC1
A
411 423Right-handed alpha
Helix 20
AC2
A
427 432Right-handed alpha
Helix 21
AC3
A
434 450Right-handed alpha
Helix 22
AC4
A
451 453Right-handed 310
Helix 23
AC5
A
461 477Right-handed alpha
Helix 24
AC6
A
480 496Right-handed alpha
Helix 25
AC7
A
498 507Right-handed alpha
Helix 26
AC8
B
6 24Right-handed alpha
Helix 27
AC9
B
25 31Right-handed alpha
Helix 28
AD1
B
39 55Right-handed alpha
Helix 29
AD2
B
59 66Right-handed alpha
Helix 30
AD3
B
67 69Right-handed 310
Helix 31
AD4
B
86 91Right-handed alpha
Helix 32
AD5
B
95 129Right-handed alpha
Helix 33
AD6
B
139 147Right-handed alpha
Helix 34
AD7
B
158 178Right-handed alpha
Helix 35
AD8
B
182 187Right-handed alpha
Helix 36
AD9
B
190 208Right-handed alpha
Helix 37
AE1
B
249 267Right-handed alpha
Helix 38
AE2
B
273 285Right-handed alpha
Helix 39
AE3
B
298 304Right-handed alpha
Helix 40
AE4
B
332 352Right-handed alpha
Helix 41
AE5
B
354 358Right-handed 310
Helix 42
AE6
B
370 387Right-handed alpha
Helix 43
AE7
B
399 404Right-handed alpha
Helix 44
AE8
B
411 423Right-handed alpha
Helix 45
AE9
B
427 432Right-handed alpha
Helix 46
AF1
B
434 450Right-handed alpha
Helix 47
AF2
B
451 453Right-handed 310
Helix 48
AF3
B
461 477Right-handed alpha
Helix 49
AF4
B
480 496Right-handed alpha
Helix 50
AF5
B
498 507Right-handed alpha
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There are 6 sheets in PDB entry 9J13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
393 395anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
227 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
242 244anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
393 395anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 221first strand
Strand 2
B
227 229anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
242 244anti-parallel
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