Analysis of interatomic Contacts of Structural Units in PDB entry:
9J17


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J17 entry

There are 2 chains in PDB entry 9J17 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 13TYR 497
B
 ASP 13TYR 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9J17. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed alpha
Helix 2
AA2
A
25 31Right-handed alpha
Helix 3
AA3
A
39 55Right-handed alpha
Helix 4
AA4
A
56 67Right-handed alpha
Helix 5
AA5
A
73 77Right-handed 310
Helix 6
AA6
A
95 128Right-handed alpha
Helix 7
AA7
A
140 147Right-handed alpha
Helix 8
AA8
A
158 179Right-handed alpha
Helix 9
AA9
A
181 186Right-handed alpha
Helix 10
AB1
A
190 208Right-handed alpha
Helix 11
AB2
A
249 264Right-handed alpha
Helix 12
AB3
A
273 286Right-handed alpha
Helix 13
AB4
A
298 310Right-handed alpha
Helix 14
AB5
A
334 356Right-handed alpha
Helix 15
AB6
A
370 387Right-handed alpha
Helix 16
AB7
A
399 404Right-handed alpha
Helix 17
AB8
A
412 422Right-handed alpha
Helix 18
AB9
A
426 430Right-handed 310
Helix 19
AC1
A
438 451Right-handed alpha
Helix 20
AC2
A
452 456Right-handed 310
Helix 21
AC3
A
460 477Right-handed alpha
Helix 22
AC4
A
479 494Right-handed alpha
Helix 23
AC5
B
14 18Right-handed alpha
Helix 24
AC6
B
25 31Right-handed alpha
Helix 25
AC7
B
39 55Right-handed alpha
Helix 26
AC8
B
56 67Right-handed alpha
Helix 27
AC9
B
73 77Right-handed 310
Helix 28
AD1
B
95 128Right-handed alpha
Helix 29
AD2
B
140 147Right-handed alpha
Helix 30
AD3
B
158 179Right-handed alpha
Helix 31
AD4
B
181 186Right-handed alpha
Helix 32
AD5
B
190 208Right-handed alpha
Helix 33
AD6
B
249 264Right-handed alpha
Helix 34
AD7
B
273 286Right-handed alpha
Helix 35
AD8
B
298 310Right-handed alpha
Helix 36
AD9
B
334 356Right-handed alpha
Helix 37
AE1
B
370 387Right-handed alpha
Helix 38
AE2
B
399 404Right-handed alpha
Helix 39
AE3
B
412 422Right-handed alpha
Helix 40
AE4
B
426 430Right-handed 310
Helix 41
AE5
B
438 451Right-handed alpha
Helix 42
AE6
B
452 456Right-handed 310
Helix 43
AE7
B
460 477Right-handed alpha
Helix 44
AE8
B
479 494Right-handed alpha
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There are 4 sheets in PDB entry 9J17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
394 395anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
228 229anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
394 395anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
228 229anti-parallel
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