Analysis of interatomic Contacts of Structural Units in PDB entry:
9J1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J1P entry

There are 6 chains in PDB entry 9J1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 13	LEU 394
B	GLU 3	ASN 340
G	ALA 12	ARG 62
N	GLN 1	VAL 124
P	HIS 1	LEU 49
R	THR 29	GLU 423

There are 33 helices in PDB entry 9J1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	39	Right-handed alpha
Helix 2	AA2	A	49	51	Right-handed 310
Helix 3	AA3	A	52	64	Right-handed alpha
Helix 4	AA4	A	233	240	Right-handed 310
Helix 5	AA5	A	265	279	Right-handed alpha
Helix 6	AA6	A	280	283	Right-handed 310
Helix 7	AA7	A	293	304	Right-handed alpha
Helix 8	AA8	A	331	350	Right-handed alpha
Helix 9	AA9	A	370	391	Right-handed alpha
Helix 10	AB1	B	4	26	Right-handed alpha
Helix 11	AB2	B	29	35	Right-handed alpha
Helix 12	AB3	G	13	24	Right-handed alpha
Helix 13	AB4	G	29	45	Right-handed alpha
Helix 14	AB5	G	46	48	Right-handed 310
Helix 15	AB6	N	28	32	Right-handed 310
Helix 16	AB7	N	62	65	Right-handed 310
Helix 17	AB8	N	87	91	Right-handed 310
Helix 18	AB9	P	2	28	Right-handed alpha
Helix 19	AC1	P	28	33	Right-handed alpha
Helix 20	AC2	P	40	44	Right-handed 310
Helix 21	AC3	R	31	53	Right-handed alpha
Helix 22	AC4	R	136	169	Right-handed alpha
Helix 23	AC5	R	174	205	Right-handed alpha
Helix 24	AC6	R	206	216	Right-handed alpha
Helix 25	AC7	R	219	223	Right-handed 310
Helix 26	AC8	R	224	256	Right-handed alpha
Helix 27	AC9	R	261	276	Right-handed alpha
Helix 28	AD1	R	277	291	Right-handed alpha
Helix 29	AD2	R	302	336	Right-handed alpha
Helix 30	AD3	R	344	360	Right-handed alpha
Helix 31	AD4	R	364	369	Right-handed alpha
Helix 32	AD5	R	377	404	Right-handed alpha
Helix 33	AD6	R	406	423	Right-handed alpha

There are 11 sheets in PDB entry 9J1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	223	first strand
Strand 2	A	41	47	parallel
Strand 3	A	243	249	parallel
Strand 4	A	287	292	parallel
Strand 5	A	359	362	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	69	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	93	98	anti-parallel
Strand 5	N	122	123	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	65	66	first strand
Strand 2	R	71	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J1P