Analysis of interatomic Contacts of Structural Units in PDB entry:
9J1U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J1U entry

There are 3 chains in PDB entry 9J1U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	LEU 2	PHE 480
B	LEU 2	PHE 480
C	LEU 2	LEU 285

There are144 helices in PDB entry 9J1U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	19	31	Right-handed alpha
Helix 2	AA2	F	48	52	Right-handed 310
Helix 3	AA3	F	66	72	Right-handed alpha
Helix 4	AA4	F	92	102	Right-handed alpha
Helix 5	AA5	F	103	105	Right-handed 310
Helix 6	AA6	F	107	111	Right-handed 310
Helix 7	AA7	F	113	118	Right-handed 310
Helix 8	AA8	F	121	127	Right-handed alpha
Helix 9	AA9	F	166	182	Right-handed alpha
Helix 10	AB1	F	191	195	Right-handed 310
Helix 11	AB2	F	208	224	Right-handed alpha
Helix 12	AB3	F	236	244	Right-handed alpha
Helix 13	AB4	F	253	265	Right-handed alpha
Helix 14	AB5	F	267	277	Right-handed alpha
Helix 15	AB6	F	294	297	Right-handed 310
Helix 16	AB7	F	301	313	Right-handed alpha
Helix 17	AB8	F	314	316	Right-handed 310
Helix 18	AB9	F	340	345	Right-handed alpha
Helix 19	AC1	F	348	362	Right-handed alpha
Helix 20	AC2	F	370	374	Right-handed alpha
Helix 21	AC3	F	379	385	Right-handed alpha
Helix 22	AC4	F	388	394	Right-handed 310
Helix 23	AC5	F	398	406	Right-handed alpha
Helix 24	AC6	F	408	424	Right-handed alpha
Helix 25	AC7	F	425	429	Right-handed 310
Helix 26	AC8	B	19	31	Right-handed alpha
Helix 27	AC9	B	66	75	Right-handed alpha
Helix 28	AD1	B	92	102	Right-handed alpha
Helix 29	AD2	B	103	105	Right-handed 310
Helix 30	AD3	B	107	111	Right-handed 310
Helix 31	AD4	B	113	118	Right-handed 310
Helix 32	AD5	B	121	127	Right-handed alpha
Helix 33	AD6	B	166	182	Right-handed alpha
Helix 34	AD7	B	191	195	Right-handed 310
Helix 35	AD8	B	208	224	Right-handed alpha
Helix 36	AD9	B	236	244	Right-handed alpha
Helix 37	AE1	B	253	265	Right-handed alpha
Helix 38	AE2	B	267	277	Right-handed alpha
Helix 39	AE3	B	294	297	Right-handed 310
Helix 40	AE4	B	301	314	Right-handed alpha
Helix 41	AE5	B	340	345	Right-handed alpha
Helix 42	AE6	B	348	362	Right-handed alpha
Helix 43	AE7	B	370	374	Right-handed alpha
Helix 44	AE8	B	379	387	Right-handed alpha
Helix 45	AE9	B	388	394	Right-handed 310
Helix 46	AF1	B	398	406	Right-handed alpha
Helix 47	AF2	B	408	424	Right-handed alpha
Helix 48	AF3	B	425	429	Right-handed 310
Helix 49	AF4	C	19	31	Right-handed alpha
Helix 50	AF5	C	66	72	Right-handed alpha
Helix 51	AF6	C	92	102	Right-handed alpha
Helix 52	AF7	C	103	105	Right-handed 310
Helix 53	AF8	C	107	111	Right-handed 310
Helix 54	AF9	C	113	118	Right-handed 310
Helix 55	AG1	C	121	127	Right-handed alpha
Helix 56	AG2	C	166	182	Right-handed alpha
Helix 57	AG3	C	191	196	Right-handed 310
Helix 58	AG4	C	208	224	Right-handed alpha
Helix 59	AG5	C	236	244	Right-handed alpha
Helix 60	AG6	C	253	265	Right-handed alpha
Helix 61	AG7	C	267	277	Right-handed alpha
Helix 62	AG8	C	294	297	Right-handed 310
Helix 63	AG9	C	301	314	Right-handed alpha
Helix 64	AH1	C	340	345	Right-handed alpha
Helix 65	AH2	C	348	362	Right-handed alpha
Helix 66	AH3	C	370	374	Right-handed alpha
Helix 67	AH4	C	379	385	Right-handed alpha
Helix 68	AH5	C	388	394	Right-handed 310
Helix 69	AH6	C	398	406	Right-handed alpha
Helix 70	AH7	C	408	424	Right-handed alpha
Helix 71	AH8	C	425	429	Right-handed 310
Helix 72	AH9	D	19	32	Right-handed alpha
Helix 73	AI1	D	48	52	Right-handed 310
Helix 74	AI2	D	66	75	Right-handed alpha
Helix 75	AI3	D	92	102	Right-handed alpha
Helix 76	AI4	D	103	105	Right-handed 310
Helix 77	AI5	D	107	111	Right-handed 310
Helix 78	AI6	D	113	118	Right-handed 310
Helix 79	AI7	D	121	127	Right-handed alpha
Helix 80	AI8	D	166	182	Right-handed alpha
Helix 81	AI9	D	191	195	Right-handed 310
Helix 82	AJ1	D	208	224	Right-handed alpha
Helix 83	AJ2	D	236	244	Right-handed alpha
Helix 84	AJ3	D	253	265	Right-handed alpha
Helix 85	AJ4	D	267	277	Right-handed alpha
Helix 86	AJ5	D	294	297	Right-handed 310
Helix 87	AJ6	D	301	313	Right-handed alpha
Helix 88	AJ7	D	314	316	Right-handed 310
Helix 89	AJ8	D	340	345	Right-handed alpha
Helix 90	AJ9	D	348	362	Right-handed alpha
Helix 91	AK1	D	370	374	Right-handed alpha
Helix 92	AK2	D	379	387	Right-handed alpha
Helix 93	AK3	D	388	394	Right-handed 310
Helix 94	AK4	D	398	407	Right-handed alpha
Helix 95	AK5	D	408	424	Right-handed alpha
Helix 96	AK6	D	425	429	Right-handed 310
Helix 97	AK7	E	19	31	Right-handed alpha
Helix 98	AK8	E	48	52	Right-handed 310
Helix 99	AK9	E	66	75	Right-handed alpha
Helix 100	AL1	E	92	102	Right-handed alpha
Helix 101	AL2	E	103	105	Right-handed 310
Helix 102	AL3	E	107	111	Right-handed 310
Helix 103	AL4	E	113	118	Right-handed 310
Helix 104	AL5	E	121	127	Right-handed alpha
Helix 105	AL6	E	166	182	Right-handed alpha
Helix 106	AL7	E	191	196	Right-handed 310
Helix 107	AL8	E	208	224	Right-handed alpha
Helix 108	AL9	E	235	244	Right-handed alpha
Helix 109	AM1	E	253	265	Right-handed alpha
Helix 110	AM2	E	267	277	Right-handed alpha
Helix 111	AM3	E	294	297	Right-handed 310
Helix 112	AM4	E	301	314	Right-handed alpha
Helix 113	AM5	E	340	345	Right-handed alpha
Helix 114	AM6	E	348	362	Right-handed alpha
Helix 115	AM7	E	370	374	Right-handed alpha
Helix 116	AM8	E	379	387	Right-handed alpha
Helix 117	AM9	E	388	394	Right-handed 310
Helix 118	AN1	E	398	407	Right-handed alpha
Helix 119	AN2	E	408	424	Right-handed alpha
Helix 120	AN3	E	425	429	Right-handed 310
Helix 121	AN4	A	19	31	Right-handed alpha
Helix 122	AN5	A	48	52	Right-handed 310
Helix 123	AN6	A	66	75	Right-handed alpha
Helix 124	AN7	A	92	102	Right-handed alpha
Helix 125	AN8	A	103	105	Right-handed 310
Helix 126	AN9	A	107	111	Right-handed 310
Helix 127	AO1	A	113	118	Right-handed 310
Helix 128	AO2	A	121	127	Right-handed alpha
Helix 129	AO3	A	166	182	Right-handed alpha
Helix 130	AO4	A	191	195	Right-handed 310
Helix 131	AO5	A	208	224	Right-handed alpha
Helix 132	AO6	A	236	244	Right-handed alpha
Helix 133	AO7	A	253	264	Right-handed alpha
Helix 134	AO8	A	267	277	Right-handed alpha
Helix 135	AO9	A	294	297	Right-handed 310
Helix 136	AP1	A	301	314	Right-handed alpha
Helix 137	AP2	A	340	345	Right-handed alpha
Helix 138	AP3	A	348	362	Right-handed alpha
Helix 139	AP4	A	370	374	Right-handed alpha
Helix 140	AP5	A	379	387	Right-handed alpha
Helix 141	AP6	A	388	394	Right-handed 310
Helix 142	AP7	A	398	407	Right-handed alpha
Helix 143	AP8	A	408	424	Right-handed alpha
Helix 144	AP9	A	425	429	Right-handed 310

There are 30 sheets in PDB entry 9J1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	230	first strand
Strand 2	F	186	189	parallel
Strand 3	F	78	83	parallel
Strand 4	F	37	40	parallel
Strand 5	F	8	11	parallel
Strand 6	F	365	369	parallel
Strand 7	F	282	283	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	89	first strand
Strand 2	F	158	160	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	147	151	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	292	first strand
Strand 2	F	334	337	anti-parallel
Strand 3	F	320	321	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	434	first strand
Strand 2	F	440	447	anti-parallel
Strand 3	F	450	457	anti-parallel
Strand 4	F	462	468	anti-parallel
Strand 5	F	475	477	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	186	189	parallel
Strand 3	B	78	83	parallel
Strand 4	B	37	40	parallel
Strand 5	B	8	11	parallel
Strand 6	B	365	369	parallel
Strand 7	B	282	283	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	158	160	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	147	151	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	334	337	anti-parallel
Strand 3	B	320	321	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	450	457	anti-parallel
Strand 4	B	462	468	anti-parallel
Strand 5	B	475	477	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	C	186	189	parallel
Strand 3	C	78	83	parallel
Strand 4	C	37	40	parallel
Strand 5	C	8	11	parallel
Strand 6	C	365	369	parallel
Strand 7	C	282	283	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	158	160	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	147	151	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	334	337	anti-parallel
Strand 3	C	320	321	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	433	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	450	457	anti-parallel
Strand 4	C	462	468	anti-parallel
Strand 5	C	475	477	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	230	first strand
Strand 2	D	186	189	parallel
Strand 3	D	78	83	parallel
Strand 4	D	37	40	parallel
Strand 5	D	8	11	parallel
Strand 6	D	365	369	parallel
Strand 7	D	282	283	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	158	160	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	147	151	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	334	337	anti-parallel
Strand 3	D	320	321	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	433	first strand
Strand 2	D	440	447	anti-parallel
Strand 3	D	450	457	anti-parallel
Strand 4	D	462	468	anti-parallel
Strand 5	D	475	477	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	230	first strand
Strand 2	E	186	189	parallel
Strand 3	E	78	83	parallel
Strand 4	E	37	40	parallel
Strand 5	E	8	11	parallel
Strand 6	E	365	369	parallel
Strand 7	E	282	283	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	158	160	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	320	324	anti-parallel
Strand 3	E	333	337	anti-parallel
Strand 4	E	291	292	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	141	first strand
Strand 2	E	147	151	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	430	433	first strand
Strand 2	E	440	447	anti-parallel
Strand 3	E	450	457	anti-parallel
Strand 4	E	462	468	anti-parallel
Strand 5	E	475	477	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	186	189	parallel
Strand 3	A	78	83	parallel
Strand 4	A	37	40	parallel
Strand 5	A	8	11	parallel
Strand 6	A	365	369	parallel
Strand 7	A	282	284	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	158	160	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	147	151	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	333	337	anti-parallel
Strand 3	A	320	322	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	450	457	anti-parallel
Strand 4	A	462	468	anti-parallel
Strand 5	A	475	477	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J1U

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J1U