Analysis of interatomic Contacts of Structural Units in PDB entry:
9J24

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J24 entry

There are 3 chains in PDB entry 9J24 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 2	PHE 480
D	LEU 2	PHE 480
C	LEU 2	LEU 285

There are149 helices in PDB entry 9J24. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	19	31	Right-handed alpha
Helix 2	AA2	B	48	52	Right-handed 310
Helix 3	AA3	B	66	72	Right-handed alpha
Helix 4	AA4	B	92	102	Right-handed alpha
Helix 5	AA5	B	103	105	Right-handed 310
Helix 6	AA6	B	107	111	Right-handed 310
Helix 7	AA7	B	113	118	Right-handed 310
Helix 8	AA8	B	121	128	Right-handed alpha
Helix 9	AA9	B	166	182	Right-handed alpha
Helix 10	AB1	B	191	196	Right-handed 310
Helix 11	AB2	B	208	224	Right-handed alpha
Helix 12	AB3	B	236	244	Right-handed alpha
Helix 13	AB4	B	253	265	Right-handed alpha
Helix 14	AB5	B	267	277	Right-handed alpha
Helix 15	AB6	B	294	297	Right-handed 310
Helix 16	AB7	B	301	314	Right-handed alpha
Helix 17	AB8	B	330	332	Right-handed 310
Helix 18	AB9	B	340	345	Right-handed alpha
Helix 19	AC1	B	348	362	Right-handed alpha
Helix 20	AC2	B	370	374	Right-handed alpha
Helix 21	AC3	B	379	387	Right-handed alpha
Helix 22	AC4	B	388	394	Right-handed 310
Helix 23	AC5	B	398	407	Right-handed alpha
Helix 24	AC6	B	408	424	Right-handed alpha
Helix 25	AC7	B	425	429	Right-handed 310
Helix 26	AC8	D	19	31	Right-handed alpha
Helix 27	AC9	D	48	52	Right-handed 310
Helix 28	AD1	D	66	72	Right-handed alpha
Helix 29	AD2	D	92	102	Right-handed alpha
Helix 30	AD3	D	103	105	Right-handed 310
Helix 31	AD4	D	107	111	Right-handed 310
Helix 32	AD5	D	113	118	Right-handed 310
Helix 33	AD6	D	121	128	Right-handed alpha
Helix 34	AD7	D	166	182	Right-handed alpha
Helix 35	AD8	D	191	196	Right-handed 310
Helix 36	AD9	D	208	224	Right-handed alpha
Helix 37	AE1	D	236	244	Right-handed alpha
Helix 38	AE2	D	253	265	Right-handed alpha
Helix 39	AE3	D	267	277	Right-handed alpha
Helix 40	AE4	D	294	297	Right-handed 310
Helix 41	AE5	D	301	314	Right-handed alpha
Helix 42	AE6	D	330	332	Right-handed 310
Helix 43	AE7	D	340	345	Right-handed alpha
Helix 44	AE8	D	348	362	Right-handed alpha
Helix 45	AE9	D	370	374	Right-handed alpha
Helix 46	AF1	D	379	387	Right-handed alpha
Helix 47	AF2	D	388	394	Right-handed 310
Helix 48	AF3	D	398	407	Right-handed alpha
Helix 49	AF4	D	408	424	Right-handed alpha
Helix 50	AF5	D	425	429	Right-handed 310
Helix 51	AF6	C	19	31	Right-handed alpha
Helix 52	AF7	C	48	52	Right-handed 310
Helix 53	AF8	C	66	72	Right-handed alpha
Helix 54	AF9	C	92	102	Right-handed alpha
Helix 55	AG1	C	103	105	Right-handed 310
Helix 56	AG2	C	107	111	Right-handed 310
Helix 57	AG3	C	113	118	Right-handed 310
Helix 58	AG4	C	121	127	Right-handed alpha
Helix 59	AG5	C	166	182	Right-handed alpha
Helix 60	AG6	C	191	196	Right-handed 310
Helix 61	AG7	C	208	224	Right-handed alpha
Helix 62	AG8	C	235	244	Right-handed alpha
Helix 63	AG9	C	253	264	Right-handed alpha
Helix 64	AH1	C	267	277	Right-handed alpha
Helix 65	AH2	C	294	297	Right-handed 310
Helix 66	AH3	C	301	314	Right-handed alpha
Helix 67	AH4	C	330	332	Right-handed 310
Helix 68	AH5	C	340	345	Right-handed alpha
Helix 69	AH6	C	348	362	Right-handed alpha
Helix 70	AH7	C	370	374	Right-handed alpha
Helix 71	AH8	C	379	387	Right-handed alpha
Helix 72	AH9	C	388	394	Right-handed 310
Helix 73	AI1	C	398	407	Right-handed alpha
Helix 74	AI2	C	408	424	Right-handed alpha
Helix 75	AI3	C	425	429	Right-handed 310
Helix 76	AI4	A	19	31	Right-handed alpha
Helix 77	AI5	A	48	52	Right-handed 310
Helix 78	AI6	A	66	72	Right-handed alpha
Helix 79	AI7	A	92	102	Right-handed alpha
Helix 80	AI8	A	103	105	Right-handed 310
Helix 81	AI9	A	107	111	Right-handed 310
Helix 82	AJ1	A	113	118	Right-handed 310
Helix 83	AJ2	A	121	127	Right-handed alpha
Helix 84	AJ3	A	166	182	Right-handed alpha
Helix 85	AJ4	A	191	196	Right-handed 310
Helix 86	AJ5	A	208	224	Right-handed alpha
Helix 87	AJ6	A	236	244	Right-handed alpha
Helix 88	AJ7	A	253	264	Right-handed alpha
Helix 89	AJ8	A	267	277	Right-handed alpha
Helix 90	AJ9	A	294	297	Right-handed 310
Helix 91	AK1	A	301	314	Right-handed alpha
Helix 92	AK2	A	330	332	Right-handed 310
Helix 93	AK3	A	340	345	Right-handed alpha
Helix 94	AK4	A	348	362	Right-handed alpha
Helix 95	AK5	A	370	374	Right-handed alpha
Helix 96	AK6	A	379	387	Right-handed alpha
Helix 97	AK7	A	388	394	Right-handed 310
Helix 98	AK8	A	398	408	Right-handed alpha
Helix 99	AK9	A	408	424	Right-handed alpha
Helix 100	AL1	A	425	429	Right-handed 310
Helix 101	AL2	E	19	31	Right-handed alpha
Helix 102	AL3	E	48	52	Right-handed 310
Helix 103	AL4	E	66	72	Right-handed alpha
Helix 104	AL5	E	92	102	Right-handed alpha
Helix 105	AL6	E	103	105	Right-handed 310
Helix 106	AL7	E	107	111	Right-handed 310
Helix 107	AL8	E	113	118	Right-handed 310
Helix 108	AL9	E	121	128	Right-handed alpha
Helix 109	AM1	E	166	182	Right-handed alpha
Helix 110	AM2	E	191	196	Right-handed 310
Helix 111	AM3	E	208	224	Right-handed alpha
Helix 112	AM4	E	236	244	Right-handed alpha
Helix 113	AM5	E	253	265	Right-handed alpha
Helix 114	AM6	E	267	277	Right-handed alpha
Helix 115	AM7	E	294	297	Right-handed 310
Helix 116	AM8	E	301	314	Right-handed alpha
Helix 117	AM9	E	340	345	Right-handed alpha
Helix 118	AN1	E	348	362	Right-handed alpha
Helix 119	AN2	E	370	374	Right-handed alpha
Helix 120	AN3	E	379	387	Right-handed alpha
Helix 121	AN4	E	388	394	Right-handed 310
Helix 122	AN5	E	398	408	Right-handed alpha
Helix 123	AN6	E	408	424	Right-handed alpha
Helix 124	AN7	E	425	429	Right-handed 310
Helix 125	AN8	F	19	31	Right-handed alpha
Helix 126	AN9	F	48	52	Right-handed 310
Helix 127	AO1	F	66	72	Right-handed alpha
Helix 128	AO2	F	92	102	Right-handed alpha
Helix 129	AO3	F	103	105	Right-handed 310
Helix 130	AO4	F	107	111	Right-handed 310
Helix 131	AO5	F	113	118	Right-handed 310
Helix 132	AO6	F	121	128	Right-handed alpha
Helix 133	AO7	F	166	182	Right-handed alpha
Helix 134	AO8	F	191	196	Right-handed 310
Helix 135	AO9	F	208	224	Right-handed alpha
Helix 136	AP1	F	235	244	Right-handed alpha
Helix 137	AP2	F	253	265	Right-handed alpha
Helix 138	AP3	F	267	277	Right-handed alpha
Helix 139	AP4	F	294	297	Right-handed 310
Helix 140	AP5	F	301	314	Right-handed alpha
Helix 141	AP6	F	330	332	Right-handed 310
Helix 142	AP7	F	340	345	Right-handed alpha
Helix 143	AP8	F	348	362	Right-handed alpha
Helix 144	AP9	F	370	374	Right-handed alpha
Helix 145	AQ1	F	379	387	Right-handed alpha
Helix 146	AQ2	F	388	394	Right-handed 310
Helix 147	AQ3	F	398	407	Right-handed alpha
Helix 148	AQ4	F	408	424	Right-handed alpha
Helix 149	AQ5	F	425	429	Right-handed 310

There are 30 sheets in PDB entry 9J24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	186	189	parallel
Strand 3	B	78	83	parallel
Strand 4	B	37	40	parallel
Strand 5	B	8	11	parallel
Strand 6	B	365	369	parallel
Strand 7	B	282	284	parallel
Strand 8	B	250	251	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	334	337	anti-parallel
Strand 3	B	320	321	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	450	457	anti-parallel
Strand 4	B	462	468	anti-parallel
Strand 5	B	475	477	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	230	first strand
Strand 2	D	186	189	parallel
Strand 3	D	78	83	parallel
Strand 4	D	37	40	parallel
Strand 5	D	8	11	parallel
Strand 6	D	365	369	parallel
Strand 7	D	282	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	141	first strand
Strand 2	D	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	292	first strand
Strand 2	D	334	337	anti-parallel
Strand 3	D	320	321	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	434	first strand
Strand 2	D	440	447	anti-parallel
Strand 3	D	450	457	anti-parallel
Strand 4	D	462	468	anti-parallel
Strand 5	D	475	477	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	C	186	189	parallel
Strand 3	C	78	83	parallel
Strand 4	C	37	40	parallel
Strand 5	C	8	11	parallel
Strand 6	C	365	369	parallel
Strand 7	C	282	283	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	292	first strand
Strand 2	C	334	337	anti-parallel
Strand 3	C	320	321	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	450	457	anti-parallel
Strand 4	C	462	468	anti-parallel
Strand 5	C	475	477	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	186	189	parallel
Strand 3	A	78	83	parallel
Strand 4	A	37	40	parallel
Strand 5	A	8	11	parallel
Strand 6	A	365	369	parallel
Strand 7	A	282	283	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	334	337	anti-parallel
Strand 3	A	320	321	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	450	457	anti-parallel
Strand 4	A	462	468	anti-parallel
Strand 5	A	475	477	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	230	first strand
Strand 2	E	186	189	parallel
Strand 3	E	78	83	parallel
Strand 4	E	37	40	parallel
Strand 5	E	8	11	parallel
Strand 6	E	365	369	parallel
Strand 7	E	282	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	141	first strand
Strand 2	E	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	292	first strand
Strand 2	E	334	337	anti-parallel
Strand 3	E	320	321	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	430	433	first strand
Strand 2	E	440	447	anti-parallel
Strand 3	E	450	457	anti-parallel
Strand 4	E	462	468	anti-parallel
Strand 5	E	475	477	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	230	first strand
Strand 2	F	186	189	parallel
Strand 3	F	78	83	parallel
Strand 4	F	37	40	parallel
Strand 5	F	8	11	parallel
Strand 6	F	365	369	parallel
Strand 7	F	282	284	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	89	first strand
Strand 2	F	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	292	first strand
Strand 2	F	334	337	anti-parallel
Strand 3	F	320	321	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	430	434	first strand
Strand 2	F	440	447	anti-parallel
Strand 3	F	450	457	anti-parallel
Strand 4	F	462	468	anti-parallel
Strand 5	F	475	477	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J24

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J24