Analysis of interatomic Contacts of Structural Units in PDB entry:
9J25

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J25 entry

There are 3 chains in PDB entry 9J25 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 480
B	MET 1	PHE 480
C	MET 1	GLU 407

There are 60 helices in PDB entry 9J25. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	66	72	Right-handed alpha
Helix 4	AA4	A	92	102	Right-handed alpha
Helix 5	AA5	A	103	105	Right-handed 310
Helix 6	AA6	A	107	111	Right-handed 310
Helix 7	AA7	A	121	128	Right-handed alpha
Helix 8	AA8	A	166	182	Right-handed alpha
Helix 9	AA9	A	191	196	Right-handed 310
Helix 10	AB1	A	208	224	Right-handed alpha
Helix 11	AB2	A	235	244	Right-handed alpha
Helix 12	AB3	A	253	265	Right-handed alpha
Helix 13	AB4	A	267	277	Right-handed alpha
Helix 14	AB5	A	301	311	Right-handed alpha
Helix 15	AB6	A	340	345	Right-handed alpha
Helix 16	AB7	A	348	362	Right-handed alpha
Helix 17	AB8	A	370	374	Right-handed alpha
Helix 18	AB9	A	398	407	Right-handed alpha
Helix 19	AC1	A	408	424	Right-handed alpha
Helix 20	AC2	A	425	429	Right-handed 310
Helix 21	AC3	B	19	32	Right-handed alpha
Helix 22	AC4	B	48	52	Right-handed 310
Helix 23	AC5	B	66	72	Right-handed alpha
Helix 24	AC6	B	92	102	Right-handed alpha
Helix 25	AC7	B	103	105	Right-handed 310
Helix 26	AC8	B	107	111	Right-handed 310
Helix 27	AC9	B	121	128	Right-handed alpha
Helix 28	AD1	B	166	182	Right-handed alpha
Helix 29	AD2	B	191	196	Right-handed 310
Helix 30	AD3	B	208	224	Right-handed alpha
Helix 31	AD4	B	235	244	Right-handed alpha
Helix 32	AD5	B	253	265	Right-handed alpha
Helix 33	AD6	B	267	277	Right-handed alpha
Helix 34	AD7	B	301	313	Right-handed alpha
Helix 35	AD8	B	340	345	Right-handed alpha
Helix 36	AD9	B	348	362	Right-handed alpha
Helix 37	AE1	B	370	374	Right-handed alpha
Helix 38	AE2	B	398	408	Right-handed alpha
Helix 39	AE3	B	408	424	Right-handed alpha
Helix 40	AE4	B	425	429	Right-handed 310
Helix 41	AE5	C	19	31	Right-handed alpha
Helix 42	AE6	C	66	72	Right-handed alpha
Helix 43	AE7	C	92	102	Right-handed alpha
Helix 44	AE8	C	103	105	Right-handed 310
Helix 45	AE9	C	107	111	Right-handed 310
Helix 46	AF1	C	121	128	Right-handed alpha
Helix 47	AF2	C	166	182	Right-handed alpha
Helix 48	AF3	C	191	196	Right-handed 310
Helix 49	AF4	C	208	224	Right-handed alpha
Helix 50	AF5	C	236	244	Right-handed alpha
Helix 51	AF6	C	253	265	Right-handed alpha
Helix 52	AF7	C	267	277	Right-handed alpha
Helix 53	AF8	C	292	296	Right-handed 310
Helix 54	AF9	C	301	312	Right-handed alpha
Helix 55	AG1	C	340	345	Right-handed alpha
Helix 56	AG2	C	348	362	Right-handed alpha
Helix 57	AG3	C	370	375	Right-handed alpha
Helix 58	AG4	C	398	408	Right-handed alpha
Helix 59	AG5	C	408	424	Right-handed alpha
Helix 60	AG6	C	425	429	Right-handed 310

There are 12 sheets in PDB entry 9J25. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	186	189	parallel
Strand 3	A	78	83	parallel
Strand 4	A	37	40	parallel
Strand 5	A	8	11	parallel
Strand 6	A	365	369	parallel
Strand 7	A	282	283	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	434	first strand
Strand 2	A	440	447	anti-parallel
Strand 3	A	450	457	anti-parallel
Strand 4	A	462	469	anti-parallel
Strand 5	A	474	477	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	186	189	parallel
Strand 3	B	78	83	parallel
Strand 4	B	37	40	parallel
Strand 5	B	8	11	parallel
Strand 6	B	365	369	parallel
Strand 7	B	282	283	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	141	first strand
Strand 2	B	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	440	447	anti-parallel
Strand 3	B	450	457	anti-parallel
Strand 4	B	462	469	anti-parallel
Strand 5	B	474	477	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	C	186	190	parallel
Strand 3	C	78	84	parallel
Strand 4	C	37	40	parallel
Strand 5	C	8	11	parallel
Strand 6	C	365	369	parallel
Strand 7	C	282	283	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	158	160	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	141	first strand
Strand 2	C	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	434	first strand
Strand 2	C	440	447	anti-parallel
Strand 3	C	450	457	anti-parallel
Strand 4	C	462	469	anti-parallel
Strand 5	C	474	477	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J25

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J25