Analysis of interatomic Contacts of Structural Units in PDB entry:
9J2C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J2C entry

There are 2 chains in PDB entry 9J2C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9ALA 277
B
 PRO 9THR 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9J2C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 32Right-handed alpha
Helix 2
AA2
A
39 48Right-handed alpha
Helix 3
AA3
A
52 86Right-handed alpha
Helix 4
AA4
A
91 111Right-handed alpha
Helix 5
AA5
A
113 118Right-handed alpha
Helix 6
AA6
A
122 126Right-handed 310
Helix 7
AA7
A
127 136Right-handed alpha
Helix 8
AA8
A
136 142Right-handed alpha
Helix 9
AA9
A
145 153Right-handed alpha
Helix 10
AB1
A
156 170Right-handed alpha
Helix 11
AB2
A
174 200Right-handed alpha
Helix 12
AB3
A
211 214Right-handed 310
Helix 13
AB4
A
215 228Right-handed alpha
Helix 14
AB5
A
238 243Right-handed 310
Helix 15
AB6
A
245 275Right-handed alpha
Helix 16
AB7
B
14 32Right-handed alpha
Helix 17
AB8
B
39 48Right-handed alpha
Helix 18
AB9
B
52 86Right-handed alpha
Helix 19
AC1
B
91 111Right-handed alpha
Helix 20
AC2
B
113 118Right-handed alpha
Helix 21
AC3
B
122 126Right-handed 310
Helix 22
AC4
B
127 136Right-handed alpha
Helix 23
AC5
B
136 142Right-handed alpha
Helix 24
AC6
B
145 154Right-handed alpha
Helix 25
AC7
B
156 170Right-handed alpha
Helix 26
AC8
B
174 200Right-handed alpha
Helix 27
AC9
B
212 214Right-handed 310
Helix 28
AD1
B
215 225Right-handed alpha
Helix 29
AD2
B
238 243Right-handed 310
Helix 30
AD3
B
245 275Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 9J2C.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
206 207anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il