Analysis of interatomic Contacts of Structural Units in PDB entry:
9J2F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J2F entry

There are 54 chains in PDB entry 9J2F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	CYS 1	ALA 331
L	ALA 1	SER 273
M	ALA 1	GLN 331
H	TYR 2	LEU 260
A	SER 7	PRO 56
B	PRO 5	VAL 55
G	GLN 9	ARG 36
D	SER 7	PRO 56
E	PRO 5	VAL 55
F	TYR 1	ARG 36
I	SER 7	PRO 56
J	THR 8	VAL 55
K	TYR 1	ARG 36
N	SER 7	PRO 56
O	PRO 5	VAL 55
P	TYR 1	ARG 36
Q	SER 7	PRO 56
R	SER 6	VAL 55
S	TYR 1	ARG 36
T	SER 7	PRO 56
U	SER 6	VAL 55
V	TYR 1	ARG 36
W	SER 7	PRO 56
X	SER 6	VAL 55
Y	TYR 1	ARG 36
Z	SER 7	PRO 56
1	SER 6	VAL 55
2	TYR 1	ARG 36
3	SER 7	PRO 56
4	SER 6	VAL 55
5	TYR 1	ARG 36
6	SER 7	PRO 56
7	SER 6	VAL 55
8	TYR 1	ARG 36
9	SER 7	PRO 56
0	SER 6	VAL 55
a	TYR 1	ARG 36
b	SER 7	PRO 56
c	SER 6	VAL 55
d	TYR 1	ARG 36
e	SER 7	PRO 56
f	SER 6	VAL 55
g	TYR 1	ARG 36
h	SER 7	PRO 56
i	SER 6	VAL 55
j	TYR 1	ARG 36
k	SER 7	PRO 56
l	SER 6	VAL 55
m	TYR 1	ARG 36
n	SER 7	PRO 56
o	SER 6	VAL 55
p	TYR 1	ARG 36
q	SER 7	PRO 56
r	SER 6	VAL 55

There are142 helices in PDB entry 9J2F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	24	36	Right-handed alpha
Helix 2	AA2	C	51	56	Right-handed alpha
Helix 3	AA3	C	66	81	Right-handed alpha
Helix 4	AA4	C	85	90	Right-handed 310
Helix 5	AA5	C	101	121	Right-handed alpha
Helix 6	AA6	C	121	126	Right-handed alpha
Helix 7	AA7	C	131	137	Right-handed alpha
Helix 8	AA8	C	161	166	Right-handed alpha
Helix 9	AA9	C	169	176	Right-handed alpha
Helix 10	AB1	C	186	192	Right-handed alpha
Helix 11	AB2	C	214	218	Right-handed 310
Helix 12	AB3	C	221	239	Right-handed alpha
Helix 13	AB4	C	241	245	Right-handed 310
Helix 14	AB5	C	247	251	Right-handed 310
Helix 15	AB6	C	254	258	Right-handed 310
Helix 16	AB7	C	259	279	Right-handed alpha
Helix 17	AB8	C	280	287	Right-handed 310
Helix 18	AB9	C	288	292	Right-handed 310
Helix 19	AC1	C	302	308	Right-handed alpha
Helix 20	AC2	C	312	317	Right-handed 310
Helix 21	AC3	C	323	327	Right-handed 310
Helix 22	AC4	L	6	10	Right-handed 310
Helix 23	AC5	L	31	55	Right-handed alpha
Helix 24	AC6	L	70	74	Right-handed 310
Helix 25	AC7	L	79	82	Right-handed 310
Helix 26	AC8	L	83	111	Right-handed alpha
Helix 27	AC9	L	115	133	Right-handed alpha
Helix 28	AD1	L	133	140	Right-handed alpha
Helix 29	AD2	L	141	145	Right-handed 310
Helix 30	AD3	L	151	163	Right-handed alpha
Helix 31	AD4	L	164	165	Right-handed 310
Helix 32	AD5	L	166	169	Right-handed 310
Helix 33	AD6	L	170	199	Right-handed alpha
Helix 34	AD7	L	208	221	Right-handed alpha
Helix 35	AD8	L	225	251	Right-handed alpha
Helix 36	AD9	L	258	263	Right-handed alpha
Helix 37	AE1	L	263	268	Right-handed alpha
Helix 38	AE2	L	269	273	Right-handed 310
Helix 39	AE3	M	2	6	Right-handed 310
Helix 40	AE4	M	25	27	Right-handed 310
Helix 41	AE5	M	38	43	Right-handed alpha
Helix 42	AE6	M	53	78	Right-handed alpha
Helix 43	AE7	M	81	89	Right-handed alpha
Helix 44	AE8	M	107	110	Right-handed 310
Helix 45	AE9	M	111	139	Right-handed alpha
Helix 46	AF1	M	143	161	Right-handed alpha
Helix 47	AF2	M	161	168	Right-handed alpha
Helix 48	AF3	M	169	173	Right-handed 310
Helix 49	AF4	M	178	192	Right-handed alpha
Helix 50	AF5	M	194	197	Right-handed 310
Helix 51	AF6	M	198	225	Right-handed alpha
Helix 52	AF7	M	226	229	Right-handed 310
Helix 53	AF8	M	232	239	Right-handed alpha
Helix 54	AF9	M	241	256	Right-handed alpha
Helix 55	AG1	M	262	286	Right-handed alpha
Helix 56	AG2	M	292	300	Right-handed alpha
Helix 57	AG3	M	322	326	Right-handed 310
Helix 58	AG4	H	11	31	Right-handed alpha
Helix 59	AG5	H	31	37	Right-handed alpha
Helix 60	AG6	H	108	113	Right-handed alpha
Helix 61	AG7	H	114	118	Right-handed 310
Helix 62	AG8	H	140	142	Right-handed 310
Helix 63	AG9	H	201	203	Right-handed 310
Helix 64	AH1	H	216	223	Right-handed 310
Helix 65	AH2	H	233	251	Right-handed alpha
Helix 66	AH3	H	252	257	Right-handed 310
Helix 67	AH4	A	7	11	Right-handed 310
Helix 68	AH5	A	12	17	Right-handed alpha
Helix 69	AH6	A	17	42	Right-handed alpha
Helix 70	AH7	B	13	44	Right-handed alpha
Helix 71	AH8	G	14	16	Right-handed 310
Helix 72	AH9	G	17	35	Right-handed alpha
Helix 73	AI1	D	8	15	Right-handed 310
Helix 74	AI2	D	17	43	Right-handed alpha
Helix 75	AI3	E	11	44	Right-handed alpha
Helix 76	AI4	F	14	16	Right-handed 310
Helix 77	AI5	F	17	35	Right-handed alpha
Helix 78	AI6	I	8	11	Right-handed 310
Helix 79	AI7	I	12	17	Right-handed alpha
Helix 80	AI8	I	17	43	Right-handed alpha
Helix 81	AI9	J	11	44	Right-handed alpha
Helix 82	AJ1	K	17	36	Right-handed alpha
Helix 83	AJ2	N	8	15	Right-handed 310
Helix 84	AJ3	N	17	42	Right-handed alpha
Helix 85	AJ4	O	11	44	Right-handed alpha
Helix 86	AJ5	P	17	35	Right-handed alpha
Helix 87	AJ6	Q	8	15	Right-handed 310
Helix 88	AJ7	Q	17	42	Right-handed alpha
Helix 89	AJ8	R	11	44	Right-handed alpha
Helix 90	AJ9	S	17	35	Right-handed alpha
Helix 91	AK1	T	8	15	Right-handed 310
Helix 92	AK2	T	17	42	Right-handed alpha
Helix 93	AK3	U	13	44	Right-handed alpha
Helix 94	AK4	V	17	35	Right-handed alpha
Helix 95	AK5	W	7	15	Right-handed 310
Helix 96	AK6	W	17	42	Right-handed alpha
Helix 97	AK7	X	12	44	Right-handed alpha
Helix 98	AK8	Y	17	35	Right-handed alpha
Helix 99	AK9	Z	8	15	Right-handed 310
Helix 100	AL1	Z	17	42	Right-handed alpha
Helix 101	AL2	1	11	44	Right-handed alpha
Helix 102	AL3	2	3	7	Right-handed 310
Helix 103	AL4	2	14	16	Right-handed 310
Helix 104	AL5	2	17	35	Right-handed alpha
Helix 105	AL6	3	8	15	Right-handed 310
Helix 106	AL7	3	17	42	Right-handed alpha
Helix 107	AL8	4	11	44	Right-handed alpha
Helix 108	AL9	5	17	35	Right-handed alpha
Helix 109	AM1	6	8	15	Right-handed 310
Helix 110	AM2	6	17	43	Right-handed alpha
Helix 111	AM3	7	11	44	Right-handed alpha
Helix 112	AM4	8	17	35	Right-handed alpha
Helix 113	AM5	9	8	15	Right-handed 310
Helix 114	AM6	9	17	42	Right-handed alpha
Helix 115	AM7	0	11	44	Right-handed alpha
Helix 116	AM8	a	14	16	Right-handed 310
Helix 117	AM9	a	17	36	Right-handed alpha
Helix 118	AN1	b	8	10	Right-handed 310
Helix 119	AN2	b	11	16	Right-handed alpha
Helix 120	AN3	b	17	41	Right-handed alpha
Helix 121	AN4	c	11	44	Right-handed alpha
Helix 122	AN5	d	17	35	Right-handed alpha
Helix 123	AN6	e	8	15	Right-handed 310
Helix 124	AN7	e	17	43	Right-handed alpha
Helix 125	AN8	f	11	44	Right-handed alpha
Helix 126	AN9	g	14	16	Right-handed 310
Helix 127	AO1	g	17	35	Right-handed alpha
Helix 128	AO2	h	8	15	Right-handed 310
Helix 129	AO3	h	17	42	Right-handed alpha
Helix 130	AO4	i	12	44	Right-handed alpha
Helix 131	AO5	j	17	35	Right-handed alpha
Helix 132	AO6	k	8	15	Right-handed 310
Helix 133	AO7	k	17	42	Right-handed alpha
Helix 134	AO8	l	12	44	Right-handed alpha
Helix 135	AO9	m	17	35	Right-handed alpha
Helix 136	AP1	n	7	15	Right-handed 310
Helix 137	AP2	n	17	42	Right-handed alpha
Helix 138	AP3	o	13	44	Right-handed alpha
Helix 139	AP4	p	17	36	Right-handed alpha
Helix 140	AP5	q	8	15	Right-handed 310
Helix 141	AP6	q	17	43	Right-handed alpha
Helix 142	AP7	r	11	44	Right-handed alpha

There are 11 sheets in PDB entry 9J2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	22	23	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	26	first strand
Strand 2	L	29	30	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	12	13	first strand
Strand 2	H	146	147	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	30	first strand
Strand 2	M	50	51	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	35	first strand
Strand 2	M	46	47	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	94	first strand
Strand 2	M	176	177	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	69	first strand
Strand 2	H	75	78	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	94	first strand
Strand 2	H	103	105	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	138	first strand
Strand 2	H	166	176	anti-parallel
Strand 3	H	181	189	anti-parallel
Strand 4	H	195	199	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	138	first strand
Strand 2	H	166	176	anti-parallel
Strand 3	H	158	160	anti-parallel
Strand 4	H	210	211	parallel
Strand 5	H	204	205	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	2	3	first strand
Strand 2	j	7	8	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J2F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J2F