Analysis of interatomic Contacts of Structural Units in PDB entry:
9J2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J2K entry

There are 4 chains in PDB entry 9J2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5SER 285
A
 GLN 287LEU 459
B
 THR 3SER 285
B
 GLN 287LEU 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9J2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 15Right-handed alpha
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
53 58Right-handed alpha
Helix 4
AA4
A
65 79Right-handed alpha
Helix 5
AA5
A
90 104Right-handed alpha
Helix 6
AA6
A
116 135Right-handed alpha
Helix 7
AA7
A
154 161Right-handed alpha
Helix 8
AA8
A
163 167Right-handed 310
Helix 9
AA9
A
184 189Right-handed alpha
Helix 10
AB1
A
194 214Right-handed alpha
Helix 11
AB2
A
238 249Right-handed alpha
Helix 12
AB3
A
270 276Right-handed alpha
Helix 13
AB4
A
285 289Right-handed 310
Helix 14
AB5
A
302 316Right-handed alpha
Helix 15
AB6
A
327 344Right-handed alpha
Helix 16
AB7
A
345 363Right-handed alpha
Helix 17
AB8
A
398 411Right-handed alpha
Helix 18
AB9
A
431 456Right-handed alpha
Helix 19
AC1
B
5 15Right-handed alpha
Helix 20
AC2
B
21 29Right-handed alpha
Helix 21
AC3
B
53 58Right-handed alpha
Helix 22
AC4
B
65 79Right-handed alpha
Helix 23
AC5
B
90 104Right-handed alpha
Helix 24
AC6
B
116 135Right-handed alpha
Helix 25
AC7
B
154 161Right-handed alpha
Helix 26
AC8
B
163 167Right-handed 310
Helix 27
AC9
B
184 189Right-handed alpha
Helix 28
AD1
B
194 214Right-handed alpha
Helix 29
AD2
B
238 250Right-handed alpha
Helix 30
AD3
B
270 276Right-handed alpha
Helix 31
AD4
B
285 289Right-handed 310
Helix 32
AD5
B
302 316Right-handed alpha
Helix 33
AD6
B
327 344Right-handed alpha
Helix 34
AD7
B
345 363Right-handed alpha
Helix 35
AD8
B
398 411Right-handed alpha
Helix 36
AD9
B
431 456Right-handed alpha
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There are 6 sheets in PDB entry 9J2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
48 51parallel
Strand 3
A
40 43anti-parallel
Strand 4
A
31 37anti-parallel
Strand 5
B
88 89parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
B
31 37parallel
Strand 3
B
40 43anti-parallel
Strand 4
B
48 51anti-parallel
Strand 5
B
413 414parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
296 301anti-parallel
Strand 3
A
281 284anti-parallel
Strand 4
A
253 257parallel
Strand 5
A
218 223parallel
Strand 6
A
142 146parallel
Strand 7
A
177 180parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 376first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
421 424anti-parallel
Strand 4
A
416 418anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 114first strand
Strand 2
B
296 301anti-parallel
Strand 3
B
281 284anti-parallel
Strand 4
B
253 257parallel
Strand 5
B
218 223parallel
Strand 6
B
142 146parallel
Strand 7
B
177 180parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 376first strand
Strand 2
B
379 384anti-parallel
Strand 3
B
421 424anti-parallel
Strand 4
B
416 418anti-parallel
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