Analysis of interatomic Contacts of Structural Units in PDB entry:
9J2L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J2L entry

There are 3 chains in PDB entry 9J2L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 267
B
 MET 1THR 262
C
 MET 1THR 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9J2L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed 310
Helix 2
AA2
A
20 28Right-handed alpha
Helix 3
AA3
A
28 33Right-handed alpha
Helix 4
AA4
A
71 77Right-handed 310
Helix 5
AA5
A
84 98Right-handed alpha
Helix 6
AA6
A
111 122Right-handed alpha
Helix 7
AA7
A
139 151Right-handed alpha
Helix 8
AA8
A
152 156Right-handed 310
Helix 9
AA9
A
181 198Right-handed alpha
Helix 10
AB1
A
199 205Right-handed alpha
Helix 11
AB2
A
205 210Right-handed alpha
Helix 12
AB3
A
212 217Right-handed alpha
Helix 13
AB4
A
223 232Right-handed alpha
Helix 14
AB5
B
11 17Right-handed 310
Helix 15
AB6
B
20 28Right-handed alpha
Helix 16
AB7
B
28 33Right-handed alpha
Helix 17
AB8
B
72 77Right-handed alpha
Helix 18
AB9
B
84 98Right-handed alpha
Helix 19
AC1
B
111 122Right-handed alpha
Helix 20
AC2
B
139 151Right-handed alpha
Helix 21
AC3
B
152 156Right-handed 310
Helix 22
AC4
B
181 197Right-handed alpha
Helix 23
AC5
B
199 205Right-handed alpha
Helix 24
AC6
B
206 209Right-handed 310
Helix 25
AC7
B
212 217Right-handed alpha
Helix 26
AC8
B
223 232Right-handed alpha
Helix 27
AC9
C
11 17Right-handed 310
Helix 28
AD1
C
20 28Right-handed alpha
Helix 29
AD2
C
28 33Right-handed alpha
Helix 30
AD3
C
72 77Right-handed alpha
Helix 31
AD4
C
84 98Right-handed alpha
Helix 32
AD5
C
111 122Right-handed alpha
Helix 33
AD6
C
139 150Right-handed alpha
Helix 34
AD7
C
151 156Right-handed 310
Helix 35
AD8
C
181 197Right-handed alpha
Helix 36
AD9
C
199 205Right-handed alpha
Helix 37
AE1
C
206 209Right-handed 310
Helix 38
AE2
C
212 217Right-handed alpha
Helix 39
AE3
C
223 233Right-handed alpha
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There are 6 sheets in PDB entry 9J2L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 134first strand
Strand 2
A
40 49parallel
Strand 3
A
158 164parallel
Strand 4
A
4 8parallel
Strand 5
A
256 260anti-parallel
Strand 6
A
238 243anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
103 105parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 134first strand
Strand 2
B
40 49parallel
Strand 3
B
158 164parallel
Strand 4
B
4 8parallel
Strand 5
B
256 260anti-parallel
Strand 6
B
238 243anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
103 105parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 134first strand
Strand 2
C
40 49parallel
Strand 3
C
158 164parallel
Strand 4
C
4 8parallel
Strand 5
C
256 260anti-parallel
Strand 6
C
238 243anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 56first strand
Strand 2
C
103 105parallel
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