Analysis of interatomic Contacts of Structural Units in PDB entry:
9J2R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J2R entry

There are 2 chains in PDB entry 9J2R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4VAL 373
B
 SER 4VAL 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9J2R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 21Right-handed alpha
Helix 2
AA2
A
23 27Right-handed 310
Helix 3
AA3
A
29 42Right-handed alpha
Helix 4
AA4
A
45 48Right-handed 310
Helix 5
AA5
A
49 61Right-handed alpha
Helix 6
AA6
A
68 77Right-handed alpha
Helix 7
AA7
A
108 115Right-handed alpha
Helix 8
AA8
A
129 133Right-handed 310
Helix 9
AA9
A
140 144Right-handed 310
Helix 10
AB1
A
159 169Right-handed alpha
Helix 11
AB2
A
169 178Right-handed alpha
Helix 12
AB3
A
190 210Right-handed alpha
Helix 13
AB4
A
219 223Right-handed 310
Helix 14
AB5
A
225 247Right-handed alpha
Helix 15
AB6
A
251 268Right-handed alpha
Helix 16
AB7
A
269 273Right-handed 310
Helix 17
AB8
A
279 295Right-handed alpha
Helix 18
AB9
A
310 328Right-handed alpha
Helix 19
AC1
A
329 331Right-handed 310
Helix 20
AC2
A
333 348Right-handed alpha
Helix 21
AC3
A
361 372Right-handed alpha
Helix 22
AC4
B
5 21Right-handed alpha
Helix 23
AC5
B
23 27Right-handed 310
Helix 24
AC6
B
29 43Right-handed alpha
Helix 25
AC7
B
45 48Right-handed 310
Helix 26
AC8
B
49 61Right-handed alpha
Helix 27
AC9
B
68 77Right-handed alpha
Helix 28
AD1
B
108 115Right-handed alpha
Helix 29
AD2
B
129 133Right-handed 310
Helix 30
AD3
B
140 144Right-handed 310
Helix 31
AD4
B
159 169Right-handed alpha
Helix 32
AD5
B
169 178Right-handed alpha
Helix 33
AD6
B
190 210Right-handed alpha
Helix 34
AD7
B
219 223Right-handed 310
Helix 35
AD8
B
225 247Right-handed alpha
Helix 36
AD9
B
251 268Right-handed alpha
Helix 37
AE1
B
269 273Right-handed 310
Helix 38
AE2
B
279 295Right-handed alpha
Helix 39
AE3
B
310 328Right-handed alpha
Helix 40
AE4
B
329 331Right-handed 310
Helix 41
AE5
B
333 348Right-handed alpha
Helix 42
AE6
B
361 372Right-handed alpha
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There are 6 sheets in PDB entry 9J2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
119 127anti-parallel
Strand 4
A
155 158parallel
Strand 5
A
138 139anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
304 307anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 352first strand
Strand 2
A
357 359anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
97 104anti-parallel
Strand 3
B
119 127anti-parallel
Strand 4
B
155 158parallel
Strand 5
B
138 139anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 301first strand
Strand 2
B
304 307anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 352first strand
Strand 2
B
357 359anti-parallel
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