Analysis of interatomic Contacts of Structural Units in PDB entry:
9J31

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J31 entry

There are 5 chains in PDB entry 9J31 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 3	SER 343
D	ASP 39	LEU 283
A	VAL 5	LEU 377
R	CYS 17	LEU 315
G	ASN 5	ARG 62

There are 29 helices in PDB entry 9J31. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	3	26	Right-handed alpha
Helix 2	AA2	B	29	35	Right-handed alpha
Helix 3	AA3	D	91	94	Right-handed 310
Helix 4	AA4	D	100	103	Right-handed 310
Helix 5	AA5	D	125	129	Right-handed 310
Helix 6	AA6	D	258	262	Right-handed 310
Helix 7	AA7	A	6	33	Right-handed alpha
Helix 8	AA8	A	45	54	Right-handed alpha
Helix 9	AA9	A	225	232	Right-handed 310
Helix 10	AB1	A	248	261	Right-handed alpha
Helix 11	AB2	A	276	287	Right-handed alpha
Helix 12	AB3	A	290	295	Right-handed alpha
Helix 13	AB4	A	314	336	Right-handed alpha
Helix 14	AB5	A	353	374	Right-handed alpha
Helix 15	AB6	R	23	28	Right-handed 310
Helix 16	AB7	R	29	56	Right-handed alpha
Helix 17	AB8	R	59	88	Right-handed alpha
Helix 18	AB9	R	100	129	Right-handed alpha
Helix 19	AC1	R	138	157	Right-handed alpha
Helix 20	AC2	R	183	196	Right-handed alpha
Helix 21	AC3	R	198	218	Right-handed alpha
Helix 22	AC4	R	223	245	Right-handed alpha
Helix 23	AC5	R	245	262	Right-handed alpha
Helix 24	AC6	R	267	271	Right-handed 310
Helix 25	AC7	R	272	284	Right-handed alpha
Helix 26	AC8	R	284	294	Right-handed alpha
Helix 27	AC9	R	298	315	Right-handed alpha
Helix 28	AD1	G	6	24	Right-handed alpha
Helix 29	AD2	G	29	44	Right-handed alpha

There are 12 sheets in PDB entry 9J31. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	56	63	anti-parallel
Strand 3	D	116	121	anti-parallel
Strand 4	D	106	111	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	153	157	parallel
Strand 3	D	130	137	anti-parallel
Strand 4	D	71	77	anti-parallel
Strand 5	D	83	89	anti-parallel
Strand 6	D	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	249	254	anti-parallel
Strand 3	D	241	246	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	227	first strand
Strand 2	D	212	217	anti-parallel
Strand 3	D	264	269	anti-parallel
Strand 4	D	281	282	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	199	207	anti-parallel
Strand 3	A	210	218	anti-parallel
Strand 4	A	34	40	parallel
Strand 5	A	236	242	parallel
Strand 6	A	269	275	parallel
Strand 7	A	342	346	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J31

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J31