Analysis of interatomic Contacts of Structural Units in PDB entry:
9J34

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J34 entry

There are 4 chains in PDB entry 9J34 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 84	ARG 603
A	ILE 84	ARG 603
B	ILE 84	ARG 603
C	ILE 84	ARG 603

There are105 helices in PDB entry 9J34. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	89	96	Right-handed alpha
Helix 2	AA2	D	97	106	Right-handed alpha
Helix 3	AA3	D	109	115	Right-handed 310
Helix 4	AA4	D	129	145	Right-handed alpha
Helix 5	AA5	D	147	152	Right-handed alpha
Helix 6	AA6	D	178	187	Right-handed alpha
Helix 7	AA7	D	187	194	Right-handed alpha
Helix 8	AA8	D	197	205	Right-handed alpha
Helix 9	AA9	D	206	210	Right-handed 310
Helix 10	AB1	D	213	229	Right-handed alpha
Helix 11	AB2	D	236	245	Right-handed alpha
Helix 12	AB3	D	256	295	Right-handed alpha
Helix 13	AB4	D	317	322	Right-handed alpha
Helix 14	AB5	D	334	336	Right-handed 310
Helix 15	AB6	D	337	343	Right-handed alpha
Helix 16	AB7	D	350	368	Right-handed alpha
Helix 17	AB8	D	378	410	Right-handed alpha
Helix 18	AB9	D	411	425	Right-handed alpha
Helix 19	AC1	D	434	453	Right-handed alpha
Helix 20	AC2	D	456	463	Right-handed alpha
Helix 21	AC3	D	465	477	Right-handed alpha
Helix 22	AC4	D	477	482	Right-handed alpha
Helix 23	AC5	D	486	490	Right-handed 310
Helix 24	AC6	D	494	501	Right-handed alpha
Helix 25	AC7	D	557	563	Right-handed alpha
Helix 26	AC8	D	592	601	Right-handed alpha
Helix 27	AC9	A	89	96	Right-handed alpha
Helix 28	AD1	A	97	106	Right-handed alpha
Helix 29	AD2	A	109	115	Right-handed 310
Helix 30	AD3	A	129	145	Right-handed alpha
Helix 31	AD4	A	147	152	Right-handed alpha
Helix 32	AD5	A	178	187	Right-handed alpha
Helix 33	AD6	A	187	194	Right-handed alpha
Helix 34	AD7	A	197	205	Right-handed alpha
Helix 35	AD8	A	206	210	Right-handed 310
Helix 36	AD9	A	213	229	Right-handed alpha
Helix 37	AE1	A	236	245	Right-handed alpha
Helix 38	AE2	A	256	295	Right-handed alpha
Helix 39	AE3	A	317	322	Right-handed alpha
Helix 40	AE4	A	334	336	Right-handed 310
Helix 41	AE5	A	337	343	Right-handed alpha
Helix 42	AE6	A	350	368	Right-handed alpha
Helix 43	AE7	A	378	410	Right-handed alpha
Helix 44	AE8	A	411	425	Right-handed alpha
Helix 45	AE9	A	434	453	Right-handed alpha
Helix 46	AF1	A	456	463	Right-handed alpha
Helix 47	AF2	A	465	477	Right-handed alpha
Helix 48	AF3	A	477	482	Right-handed alpha
Helix 49	AF4	A	486	490	Right-handed 310
Helix 50	AF5	A	494	501	Right-handed alpha
Helix 51	AF6	A	557	563	Right-handed alpha
Helix 52	AF7	A	592	601	Right-handed alpha
Helix 53	AF8	B	89	96	Right-handed alpha
Helix 54	AF9	B	97	106	Right-handed alpha
Helix 55	AG1	B	109	115	Right-handed 310
Helix 56	AG2	B	129	145	Right-handed alpha
Helix 57	AG3	B	147	152	Right-handed alpha
Helix 58	AG4	B	178	187	Right-handed alpha
Helix 59	AG5	B	187	194	Right-handed alpha
Helix 60	AG6	B	197	205	Right-handed alpha
Helix 61	AG7	B	206	210	Right-handed 310
Helix 62	AG8	B	213	229	Right-handed alpha
Helix 63	AG9	B	236	245	Right-handed alpha
Helix 64	AH1	B	256	295	Right-handed alpha
Helix 65	AH2	B	317	322	Right-handed alpha
Helix 66	AH3	B	334	336	Right-handed 310
Helix 67	AH4	B	337	343	Right-handed alpha
Helix 68	AH5	B	350	368	Right-handed alpha
Helix 69	AH6	B	378	410	Right-handed alpha
Helix 70	AH7	B	411	425	Right-handed alpha
Helix 71	AH8	B	434	453	Right-handed alpha
Helix 72	AH9	B	456	463	Right-handed alpha
Helix 73	AI1	B	465	477	Right-handed alpha
Helix 74	AI2	B	477	482	Right-handed alpha
Helix 75	AI3	B	486	490	Right-handed 310
Helix 76	AI4	B	494	501	Right-handed alpha
Helix 77	AI5	B	557	563	Right-handed alpha
Helix 78	AI6	B	592	601	Right-handed alpha
Helix 79	AI7	C	89	96	Right-handed alpha
Helix 80	AI8	C	97	106	Right-handed alpha
Helix 81	AI9	C	109	115	Right-handed 310
Helix 82	AJ1	C	129	145	Right-handed alpha
Helix 83	AJ2	C	147	152	Right-handed alpha
Helix 84	AJ3	C	178	187	Right-handed alpha
Helix 85	AJ4	C	187	194	Right-handed alpha
Helix 86	AJ5	C	197	205	Right-handed alpha
Helix 87	AJ6	C	206	210	Right-handed 310
Helix 88	AJ7	C	213	229	Right-handed alpha
Helix 89	AJ8	C	236	245	Right-handed alpha
Helix 90	AJ9	C	256	295	Right-handed alpha
Helix 91	AK1	C	301	306	Right-handed 310
Helix 92	AK2	C	317	322	Right-handed alpha
Helix 93	AK3	C	334	336	Right-handed 310
Helix 94	AK4	C	337	343	Right-handed alpha
Helix 95	AK5	C	350	368	Right-handed alpha
Helix 96	AK6	C	378	410	Right-handed alpha
Helix 97	AK7	C	411	425	Right-handed alpha
Helix 98	AK8	C	434	453	Right-handed alpha
Helix 99	AK9	C	456	463	Right-handed alpha
Helix 100	AL1	C	465	477	Right-handed alpha
Helix 101	AL2	C	477	482	Right-handed alpha
Helix 102	AL3	C	486	490	Right-handed 310
Helix 103	AL4	C	494	501	Right-handed alpha
Helix 104	AL5	C	557	563	Right-handed alpha
Helix 105	AL6	C	592	601	Right-handed alpha

There are 12 sheets in PDB entry 9J34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	120	first strand
Strand 2	D	125	128	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	503	507	first strand
Strand 2	D	585	591	anti-parallel
Strand 3	D	522	528	anti-parallel
Strand 4	D	554	555	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	512	514	first strand
Strand 2	D	578	581	anti-parallel
Strand 3	D	531	534	anti-parallel
Strand 4	D	547	549	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	120	first strand
Strand 2	A	125	128	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	507	first strand
Strand 2	A	585	591	anti-parallel
Strand 3	A	522	528	anti-parallel
Strand 4	A	554	555	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	578	581	anti-parallel
Strand 3	A	531	534	anti-parallel
Strand 4	A	547	549	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	120	first strand
Strand 2	B	125	128	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	507	first strand
Strand 2	B	585	591	anti-parallel
Strand 3	B	522	528	anti-parallel
Strand 4	B	554	555	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	514	first strand
Strand 2	B	578	581	anti-parallel
Strand 3	B	531	534	anti-parallel
Strand 4	B	547	549	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	125	128	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	507	first strand
Strand 2	C	585	591	anti-parallel
Strand 3	C	522	528	anti-parallel
Strand 4	C	554	555	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	514	first strand
Strand 2	C	578	581	anti-parallel
Strand 3	C	531	534	anti-parallel
Strand 4	C	547	549	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J34

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J34