Analysis of interatomic Contacts of Structural Units in PDB entry:
9J36

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J36 entry

There are 4 chains in PDB entry 9J36 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 86	PHE 614
C	LYS 86	PHE 614
D	LYS 86	PHE 614
B	LYS 86	PHE 614

There are107 helices in PDB entry 9J36. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	99	Right-handed alpha
Helix 2	AA2	A	103	111	Right-handed alpha
Helix 3	AA3	A	113	119	Right-handed 310
Helix 4	AA4	A	133	152	Right-handed alpha
Helix 5	AA5	A	182	188	Right-handed alpha
Helix 6	AA6	A	192	197	Right-handed alpha
Helix 7	AA7	A	201	212	Right-handed alpha
Helix 8	AA8	A	218	225	Right-handed alpha
Helix 9	AA9	A	226	240	Right-handed alpha
Helix 10	AB1	A	262	267	Right-handed alpha
Helix 11	AB2	A	267	301	Right-handed alpha
Helix 12	AB3	A	304	309	Right-handed 310
Helix 13	AB4	A	317	323	Right-handed alpha
Helix 14	AB5	A	324	334	Right-handed alpha
Helix 15	AB6	A	349	355	Right-handed alpha
Helix 16	AB7	A	356	360	Right-handed 310
Helix 17	AB8	A	362	380	Right-handed alpha
Helix 18	AB9	A	390	423	Right-handed alpha
Helix 19	AC1	A	423	444	Right-handed alpha
Helix 20	AC2	A	446	465	Right-handed alpha
Helix 21	AC3	A	468	475	Right-handed alpha
Helix 22	AC4	A	477	494	Right-handed alpha
Helix 23	AC5	A	496	501	Right-handed alpha
Helix 24	AC6	A	506	511	Right-handed alpha
Helix 25	AC7	A	568	577	Right-handed alpha
Helix 26	AC8	A	604	612	Right-handed alpha
Helix 27	AC9	C	94	99	Right-handed alpha
Helix 28	AD1	C	103	111	Right-handed alpha
Helix 29	AD2	C	113	119	Right-handed 310
Helix 30	AD3	C	133	152	Right-handed alpha
Helix 31	AD4	C	182	188	Right-handed alpha
Helix 32	AD5	C	192	197	Right-handed alpha
Helix 33	AD6	C	201	212	Right-handed alpha
Helix 34	AD7	C	215	217	Right-handed 310
Helix 35	AD8	C	218	225	Right-handed alpha
Helix 36	AD9	C	226	240	Right-handed alpha
Helix 37	AE1	C	262	267	Right-handed alpha
Helix 38	AE2	C	267	301	Right-handed alpha
Helix 39	AE3	C	304	309	Right-handed 310
Helix 40	AE4	C	317	323	Right-handed alpha
Helix 41	AE5	C	324	334	Right-handed alpha
Helix 42	AE6	C	349	355	Right-handed alpha
Helix 43	AE7	C	356	360	Right-handed 310
Helix 44	AE8	C	362	380	Right-handed alpha
Helix 45	AE9	C	390	423	Right-handed alpha
Helix 46	AF1	C	423	444	Right-handed alpha
Helix 47	AF2	C	446	465	Right-handed alpha
Helix 48	AF3	C	468	475	Right-handed alpha
Helix 49	AF4	C	477	494	Right-handed alpha
Helix 50	AF5	C	496	501	Right-handed alpha
Helix 51	AF6	C	506	511	Right-handed alpha
Helix 52	AF7	C	568	577	Right-handed alpha
Helix 53	AF8	C	604	612	Right-handed alpha
Helix 54	AF9	D	94	99	Right-handed alpha
Helix 55	AG1	D	103	111	Right-handed alpha
Helix 56	AG2	D	113	119	Right-handed 310
Helix 57	AG3	D	133	152	Right-handed alpha
Helix 58	AG4	D	182	188	Right-handed alpha
Helix 59	AG5	D	192	197	Right-handed alpha
Helix 60	AG6	D	201	212	Right-handed alpha
Helix 61	AG7	D	215	217	Right-handed 310
Helix 62	AG8	D	218	225	Right-handed alpha
Helix 63	AG9	D	226	240	Right-handed alpha
Helix 64	AH1	D	262	267	Right-handed alpha
Helix 65	AH2	D	267	301	Right-handed alpha
Helix 66	AH3	D	304	309	Right-handed 310
Helix 67	AH4	D	317	323	Right-handed alpha
Helix 68	AH5	D	324	334	Right-handed alpha
Helix 69	AH6	D	349	355	Right-handed alpha
Helix 70	AH7	D	356	360	Right-handed 310
Helix 71	AH8	D	362	380	Right-handed alpha
Helix 72	AH9	D	390	423	Right-handed alpha
Helix 73	AI1	D	423	444	Right-handed alpha
Helix 74	AI2	D	446	465	Right-handed alpha
Helix 75	AI3	D	468	475	Right-handed alpha
Helix 76	AI4	D	477	494	Right-handed alpha
Helix 77	AI5	D	496	501	Right-handed alpha
Helix 78	AI6	D	506	511	Right-handed alpha
Helix 79	AI7	D	568	577	Right-handed alpha
Helix 80	AI8	D	604	612	Right-handed alpha
Helix 81	AI9	B	94	99	Right-handed alpha
Helix 82	AJ1	B	103	111	Right-handed alpha
Helix 83	AJ2	B	113	119	Right-handed 310
Helix 84	AJ3	B	133	152	Right-handed alpha
Helix 85	AJ4	B	182	188	Right-handed alpha
Helix 86	AJ5	B	192	197	Right-handed alpha
Helix 87	AJ6	B	201	212	Right-handed alpha
Helix 88	AJ7	B	215	217	Right-handed 310
Helix 89	AJ8	B	218	225	Right-handed alpha
Helix 90	AJ9	B	226	240	Right-handed alpha
Helix 91	AK1	B	262	267	Right-handed alpha
Helix 92	AK2	B	267	301	Right-handed alpha
Helix 93	AK3	B	304	309	Right-handed 310
Helix 94	AK4	B	317	323	Right-handed alpha
Helix 95	AK5	B	324	334	Right-handed alpha
Helix 96	AK6	B	349	355	Right-handed alpha
Helix 97	AK7	B	356	360	Right-handed 310
Helix 98	AK8	B	362	380	Right-handed alpha
Helix 99	AK9	B	390	423	Right-handed alpha
Helix 100	AL1	B	423	444	Right-handed alpha
Helix 101	AL2	B	446	465	Right-handed alpha
Helix 102	AL3	B	468	475	Right-handed alpha
Helix 103	AL4	B	477	494	Right-handed alpha
Helix 104	AL5	B	496	501	Right-handed alpha
Helix 105	AL6	B	506	511	Right-handed alpha
Helix 106	AL7	B	568	577	Right-handed alpha
Helix 107	AL8	B	604	612	Right-handed alpha

There are 20 sheets in PDB entry 9J36. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	129	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	519	first strand
Strand 2	A	597	603	anti-parallel
Strand 3	A	534	540	anti-parallel
Strand 4	A	566	567	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	526	first strand
Strand 2	A	591	592	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	545	first strand
Strand 2	A	559	561	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	124	first strand
Strand 2	C	129	132	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	175	176	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	515	519	first strand
Strand 2	C	597	603	anti-parallel
Strand 3	C	534	540	anti-parallel
Strand 4	C	566	567	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	526	first strand
Strand 2	C	591	592	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	543	545	first strand
Strand 2	C	559	561	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	124	first strand
Strand 2	D	129	132	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	165	first strand
Strand 2	D	175	176	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	519	first strand
Strand 2	D	597	603	anti-parallel
Strand 3	D	534	540	anti-parallel
Strand 4	D	566	567	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	526	first strand
Strand 2	D	591	592	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	545	first strand
Strand 2	D	559	561	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	129	132	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	175	176	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	519	first strand
Strand 2	B	597	603	anti-parallel
Strand 3	B	534	540	anti-parallel
Strand 4	B	566	567	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	526	first strand
Strand 2	B	591	592	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	545	first strand
Strand 2	B	559	561	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J36

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J36