Analysis of interatomic Contacts of Structural Units in PDB entry:
9J37

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J37 entry

There are 5 chains in PDB entry 9J37 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 23	ALA 502
B	GLY 23	ALA 502
C	GLY 23	ALA 502
D	GLY 23	ALA 502
E	GLY 23	ALA 502

There are 57 helices in PDB entry 9J37. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	231	237	Right-handed alpha
Helix 3	AA3	A	237	249	Right-handed alpha
Helix 4	AA4	A	250	253	Right-handed 310
Helix 5	AA5	A	261	274	Right-handed alpha
Helix 6	AA6	A	275	278	Right-handed 310
Helix 7	AA7	A	291	311	Right-handed alpha
Helix 8	AA8	A	311	319	Right-handed alpha
Helix 9	AA9	A	328	335	Right-handed alpha
Helix 10	AB1	A	338	343	Right-handed alpha
Helix 11	AB2	A	433	489	Right-handed alpha
Helix 12	AB3	A	492	501	Right-handed alpha
Helix 13	AB4	B	24	34	Right-handed alpha
Helix 14	AB5	B	231	237	Right-handed alpha
Helix 15	AB6	B	237	249	Right-handed alpha
Helix 16	AB7	B	250	254	Right-handed 310
Helix 17	AB8	B	261	274	Right-handed alpha
Helix 18	AB9	B	275	278	Right-handed 310
Helix 19	AC1	B	291	319	Right-handed alpha
Helix 20	AC2	B	328	337	Right-handed alpha
Helix 21	AC3	B	338	343	Right-handed alpha
Helix 22	AC4	B	433	489	Right-handed alpha
Helix 23	AC5	B	492	501	Right-handed alpha
Helix 24	AC6	C	24	34	Right-handed alpha
Helix 25	AC7	C	231	237	Right-handed alpha
Helix 26	AC8	C	237	249	Right-handed alpha
Helix 27	AC9	C	250	253	Right-handed 310
Helix 28	AD1	C	261	274	Right-handed alpha
Helix 29	AD2	C	275	277	Right-handed 310
Helix 30	AD3	C	291	319	Right-handed alpha
Helix 31	AD4	C	328	337	Right-handed alpha
Helix 32	AD5	C	338	343	Right-handed alpha
Helix 33	AD6	C	433	489	Right-handed alpha
Helix 34	AD7	C	492	501	Right-handed alpha
Helix 35	AD8	D	24	34	Right-handed alpha
Helix 36	AD9	D	231	237	Right-handed alpha
Helix 37	AE1	D	237	249	Right-handed alpha
Helix 38	AE2	D	250	254	Right-handed 310
Helix 39	AE3	D	261	274	Right-handed alpha
Helix 40	AE4	D	275	278	Right-handed 310
Helix 41	AE5	D	291	311	Right-handed alpha
Helix 42	AE6	D	311	319	Right-handed alpha
Helix 43	AE7	D	328	337	Right-handed alpha
Helix 44	AE8	D	338	343	Right-handed alpha
Helix 45	AE9	D	433	489	Right-handed alpha
Helix 46	AF1	D	492	501	Right-handed alpha
Helix 47	AF2	E	24	34	Right-handed alpha
Helix 48	AF3	E	231	237	Right-handed alpha
Helix 49	AF4	E	237	249	Right-handed alpha
Helix 50	AF5	E	250	253	Right-handed 310
Helix 51	AF6	E	261	274	Right-handed alpha
Helix 52	AF7	E	275	278	Right-handed 310
Helix 53	AF8	E	291	319	Right-handed alpha
Helix 54	AF9	E	328	337	Right-handed alpha
Helix 55	AG1	E	338	343	Right-handed alpha
Helix 56	AG2	E	433	489	Right-handed alpha
Helix 57	AG3	E	492	501	Right-handed alpha

There are 20 sheets in PDB entry 9J37. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	137	140	anti-parallel
Strand 4	A	71	83	anti-parallel
Strand 5	A	143	149	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	137	140	anti-parallel
Strand 4	A	71	83	anti-parallel
Strand 5	A	51	66	anti-parallel
Strand 6	A	178	182	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	219	228	anti-parallel
Strand 4	A	196	200	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	161	170	anti-parallel
Strand 3	A	219	228	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	130	132	anti-parallel
Strand 3	B	137	140	anti-parallel
Strand 4	B	71	83	anti-parallel
Strand 5	B	143	149	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	130	132	anti-parallel
Strand 3	B	137	140	anti-parallel
Strand 4	B	71	83	anti-parallel
Strand 5	B	51	66	anti-parallel
Strand 6	B	178	182	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	219	228	anti-parallel
Strand 4	B	196	200	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	114	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	219	228	anti-parallel
Strand 4	B	203	206	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	130	132	anti-parallel
Strand 3	C	137	140	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	143	149	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	130	132	anti-parallel
Strand 3	C	137	140	anti-parallel
Strand 4	C	71	83	anti-parallel
Strand 5	C	51	66	anti-parallel
Strand 6	C	178	182	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	161	170	anti-parallel
Strand 3	C	219	228	anti-parallel
Strand 4	C	196	200	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	161	170	anti-parallel
Strand 3	C	219	228	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	137	140	anti-parallel
Strand 4	D	71	83	anti-parallel
Strand 5	D	143	149	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	130	132	anti-parallel
Strand 3	D	137	140	anti-parallel
Strand 4	D	71	83	anti-parallel
Strand 5	D	51	66	anti-parallel
Strand 6	D	178	182	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	219	228	anti-parallel
Strand 4	D	196	200	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	114	first strand
Strand 2	D	161	170	anti-parallel
Strand 3	D	219	228	anti-parallel
Strand 4	D	203	206	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	130	132	anti-parallel
Strand 3	E	137	140	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	143	149	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	130	132	anti-parallel
Strand 3	E	137	140	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	51	66	anti-parallel
Strand 6	E	178	182	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	161	170	anti-parallel
Strand 3	E	219	228	anti-parallel
Strand 4	E	196	200	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	161	170	anti-parallel
Strand 3	E	219	228	anti-parallel
Strand 4	E	203	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J37

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J37