Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3C entry

There are 2 chains in PDB entry 9J3C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7LYS 913
B
 ASN 8LYS 913
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 9J3C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 21Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
134 139Right-handed alpha
Helix 5
AA5
A
182 191Right-handed alpha
Helix 6
AA6
A
192 194Right-handed 310
Helix 7
AA7
A
230 233Right-handed 310
Helix 8
AA8
A
234 243Right-handed alpha
Helix 9
AA9
A
252 256Right-handed 310
Helix 10
AB1
A
260 274Right-handed alpha
Helix 11
AB2
A
291 305Right-handed alpha
Helix 12
AB3
A
316 320Right-handed 310
Helix 13
AB4
A
322 334Right-handed alpha
Helix 14
AB5
A
377 381Right-handed 310
Helix 15
AB6
A
390 394Right-handed 310
Helix 16
AB7
A
395 403Right-handed alpha
Helix 17
AB8
A
425 430Right-handed alpha
Helix 18
AB9
A
431 433Right-handed 310
Helix 19
AC1
A
476 487Right-handed alpha
Helix 20
AC2
A
502 506Right-handed 310
Helix 21
AC3
A
512 517Right-handed alpha
Helix 22
AC4
A
523 536Right-handed alpha
Helix 23
AC5
A
543 552Right-handed alpha
Helix 24
AC6
A
588 596Right-handed alpha
Helix 25
AC7
A
604 615Right-handed alpha
Helix 26
AC8
A
616 621Right-handed 310
Helix 27
AC9
A
634 637Right-handed 310
Helix 28
AD1
A
640 655Right-handed alpha
Helix 29
AD2
A
700 702Right-handed 310
Helix 30
AD3
A
717 728Right-handed alpha
Helix 31
AD4
A
763 780Right-handed alpha
Helix 32
AD5
A
783 787Right-handed 310
Helix 33
AD6
A
788 797Right-handed alpha
Helix 34
AD7
A
810 818Right-handed alpha
Helix 35
AD8
A
819 833Right-handed alpha
Helix 36
AD9
A
835 840Right-handed 310
Helix 37
AE1
A
842 851Right-handed alpha
Helix 38
AE2
A
861 873Right-handed alpha
Helix 39
AE3
A
881 886Right-handed alpha
Helix 40
AE4
A
888 911Right-handed alpha
Helix 41
AE5
B
9 21Right-handed alpha
Helix 42
AE6
B
36 48Right-handed alpha
Helix 43
AE7
B
111 115Right-handed 310
Helix 44
AE8
B
131 139Right-handed alpha
Helix 45
AE9
B
140 142Right-handed 310
Helix 46
AF1
B
166 171Right-handed 310
Helix 47
AF2
B
183 191Right-handed alpha
Helix 48
AF3
B
192 194Right-handed 310
Helix 49
AF4
B
208 213Right-handed alpha
Helix 50
AF5
B
234 243Right-handed alpha
Helix 51
AF6
B
249 255Right-handed alpha
Helix 52
AF7
B
260 274Right-handed alpha
Helix 53
AF8
B
291 305Right-handed alpha
Helix 54
AF9
B
322 334Right-handed alpha
Helix 55
AG1
B
377 381Right-handed 310
Helix 56
AG2
B
395 403Right-handed alpha
Helix 57
AG3
B
425 430Right-handed alpha
Helix 58
AG4
B
476 487Right-handed alpha
Helix 59
AG5
B
502 506Right-handed 310
Helix 60
AG6
B
512 517Right-handed alpha
Helix 61
AG7
B
523 536Right-handed alpha
Helix 62
AG8
B
543 552Right-handed alpha
Helix 63
AG9
B
588 596Right-handed alpha
Helix 64
AH1
B
604 615Right-handed alpha
Helix 65
AH2
B
616 620Right-handed 310
Helix 66
AH3
B
634 637Right-handed 310
Helix 67
AH4
B
640 655Right-handed alpha
Helix 68
AH5
B
700 702Right-handed 310
Helix 69
AH6
B
717 728Right-handed alpha
Helix 70
AH7
B
763 780Right-handed alpha
Helix 71
AH8
B
783 787Right-handed 310
Helix 72
AH9
B
788 797Right-handed alpha
Helix 73
AI1
B
809 818Right-handed alpha
Helix 74
AI2
B
819 830Right-handed alpha
Helix 75
AI3
B
835 840Right-handed 310
Helix 76
AI4
B
842 852Right-handed alpha
Helix 77
AI5
B
861 873Right-handed alpha
Helix 78
AI6
B
877 886Right-handed alpha
Helix 79
AI7
B
888 911Right-handed alpha
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There are 6 sheets in PDB entry 9J3C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
147 150parallel
Strand 3
A
24 29parallel
Strand 4
A
200 202parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 346first strand
Strand 2
A
356 362anti-parallel
Strand 3
A
366 372anti-parallel
Strand 4
A
309 313parallel
Strand 5
A
385 388parallel
Strand 6
A
407 413parallel
Strand 7
A
279 285parallel
Strand 8
A
461 465parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 698first strand
Strand 2
A
507 511anti-parallel
Strand 3
A
555 561anti-parallel
Strand 4
A
576 584anti-parallel
Strand 5
A
623 632anti-parallel
Strand 6
A
709 715parallel
Strand 7
A
746 752anti-parallel
Strand 8
A
730 734anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
56 59parallel
Strand 3
B
122 124parallel
Strand 4
B
147 151parallel
Strand 5
B
24 29parallel
Strand 6
B
198 202parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 346first strand
Strand 2
B
356 362anti-parallel
Strand 3
B
366 372anti-parallel
Strand 4
B
309 313parallel
Strand 5
B
385 388parallel
Strand 6
B
407 413parallel
Strand 7
B
282 285parallel
Strand 8
B
463 465parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
696 698first strand
Strand 2
B
507 511anti-parallel
Strand 3
B
555 561anti-parallel
Strand 4
B
576 584anti-parallel
Strand 5
B
623 632anti-parallel
Strand 6
B
709 715parallel
Strand 7
B
746 752anti-parallel
Strand 8
B
730 734anti-parallel
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