Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3F entry

There is 1 chain in PDB entry 9J3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 35LYS 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9J3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 64Right-handed alpha
Helix 2
AA2
A
88 93Right-handed alpha
Helix 3
AA3
A
94 96Right-handed 310
Helix 4
AA4
A
99 108Right-handed alpha
Helix 5
AA5
A
129 134Right-handed alpha
Helix 6
AA6
A
138 149Right-handed alpha
Helix 7
AA7
A
151 173Right-handed alpha
Helix 8
AA8
A
175 180Right-handed alpha
Helix 9
AA9
A
183 192Right-handed alpha
Helix 10
AB1
A
193 197Right-handed 310
Helix 11
AB2
A
198 207Right-handed alpha
Helix 12
AB3
A
207 221Right-handed alpha
Helix 13
AB4
A
234 260Right-handed alpha
Helix 14
AB5
A
276 293Right-handed alpha
Helix 15
AB6
A
338 343Right-handed alpha
Helix 16
AB7
A
382 388Right-handed alpha
Helix 17
AB8
A
393 397Right-handed 310
Helix 18
AB9
A
406 409Right-handed 310
Helix 19
AC1
A
410 425Right-handed alpha
Helix 20
AC2
A
437 443Right-handed alpha
Helix 21
AC3
A
447 461Right-handed alpha
Helix 22
AC4
A
468 487Right-handed alpha
Helix 23
AC5
A
495 498Right-handed 310
Helix 24
AC6
A
499 509Right-handed alpha
Helix 25
AC7
A
509 534Right-handed alpha
Helix 26
AC8
A
543 553Right-handed alpha
Helix 27
AC9
A
554 557Right-handed 310
Helix 28
AD1
A
559 582Right-handed alpha
Helix 29
AD2
A
588 598Right-handed alpha
Helix 30
AD3
A
601 606Right-handed alpha
Helix 31
AD4
A
613 656Right-handed alpha
Helix 32
AD5
A
674 688Right-handed alpha
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There are 4 sheets in PDB entry 9J3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
374 379parallel
Strand 3
A
351 356parallel
Strand 4
A
305 315parallel
Strand 5
A
264 275parallel
Strand 6
A
73 82parallel
Strand 7
A
117 122parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
374 379parallel
Strand 3
A
351 356parallel
Strand 4
A
305 315parallel
Strand 5
A
301 302anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
712 713parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
403 404anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il