Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3J entry

There are 2 chains in PDB entry 9J3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 101ALA 590
B
 GLU 1GLU 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9J3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 142Right-handed alpha
Helix 2
AA2
A
150 158Right-handed alpha
Helix 3
AA3
A
159 178Right-handed alpha
Helix 4
AA4
A
179 201Right-handed alpha
Helix 5
AA5
A
205 210Right-handed alpha
Helix 6
AA6
A
216 222Right-handed alpha
Helix 7
AA7
A
223 225Right-handed 310
Helix 8
AA8
A
226 235Right-handed alpha
Helix 9
AA9
A
235 252Right-handed alpha
Helix 10
AB1
A
254 265Right-handed alpha
Helix 11
AB2
A
266 274Right-handed alpha
Helix 12
AB3
A
274 302Right-handed alpha
Helix 13
AB4
A
307 338Right-handed alpha
Helix 14
AB5
A
344 348Right-handed 310
Helix 15
AB6
A
356 364Right-handed alpha
Helix 16
AB7
A
365 397Right-handed alpha
Helix 17
AB8
A
399 432Right-handed alpha
Helix 18
AB9
A
433 458Right-handed alpha
Helix 19
AC1
A
458 468Right-handed alpha
Helix 20
AC2
A
472 491Right-handed alpha
Helix 21
AC3
A
495 503Right-handed alpha
Helix 22
AC4
A
508 521Right-handed alpha
Helix 23
AC5
A
522 543Right-handed alpha
Helix 24
AC6
A
548 590Right-handed alpha
Helix 25
AC7
B
86 90Right-handed 310
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There are 4 sheets in PDB entry 9J3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
A
108 109anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
114 119parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 59anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
114 119parallel
Strand 3
B
91 98anti-parallel
Strand 4
B
108 110anti-parallel
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