Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3M entry

There are 2 chains in PDB entry 9J3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 101SER 579
B
 GLU 1SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 9J3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 108Right-handed 310
Helix 2
AA2
A
109 143Right-handed alpha
Helix 3
AA3
A
150 159Right-handed alpha
Helix 4
AA4
A
159 176Right-handed alpha
Helix 5
AA5
A
179 201Right-handed alpha
Helix 6
AA6
A
205 210Right-handed alpha
Helix 7
AA7
A
211 223Right-handed alpha
Helix 8
AA8
A
226 235Right-handed alpha
Helix 9
AA9
A
235 252Right-handed alpha
Helix 10
AB1
A
255 265Right-handed alpha
Helix 11
AB2
A
266 273Right-handed alpha
Helix 12
AB3
A
273 297Right-handed alpha
Helix 13
AB4
A
307 338Right-handed alpha
Helix 14
AB5
A
356 365Right-handed alpha
Helix 15
AB6
A
367 397Right-handed alpha
Helix 16
AB7
A
399 433Right-handed alpha
Helix 17
AB8
A
433 457Right-handed alpha
Helix 18
AB9
A
462 469Right-handed alpha
Helix 19
AC1
A
472 502Right-handed alpha
Helix 20
AC2
A
510 522Right-handed alpha
Helix 21
AC3
A
523 543Right-handed alpha
Helix 22
AC4
A
545 547Right-handed 310
Helix 23
AC5
A
548 575Right-handed alpha
Helix 24
AC6
B
28 32Right-handed 310
Helix 25
AC7
B
86 90Right-handed 310
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There are 3 sheets in PDB entry 9J3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
114 118parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
33 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
114 118parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
105 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il