Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3N entry

There are 2 chains in PDB entry 9J3N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 1HIS 121
A
 LEU 16GLN 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9J3N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
28 30Right-handed 310
Helix 2
AA2
B
87 91Right-handed 310
Helix 3
AA3
A
23 54Right-handed alpha
Helix 4
AA4
A
61 70Right-handed alpha
Helix 5
AA5
A
70 86Right-handed alpha
Helix 6
AA6
A
90 112Right-handed alpha
Helix 7
AA7
A
116 121Right-handed alpha
Helix 8
AA8
A
122 131Right-handed alpha
Helix 9
AA9
A
134 136Right-handed 310
Helix 10
AB1
A
137 146Right-handed alpha
Helix 11
AB2
A
146 166Right-handed alpha
Helix 12
AB3
A
166 176Right-handed alpha
Helix 13
AB4
A
177 209Right-handed alpha
Helix 14
AB5
A
218 249Right-handed alpha
Helix 15
AB6
A
261 266Right-handed alpha
Helix 16
AB7
A
274 279Right-handed alpha
Helix 17
AB8
A
280 283Right-handed 310
Helix 18
AB9
A
284 316Right-handed alpha
Helix 19
AC1
A
318 344Right-handed alpha
Helix 20
AC2
A
346 378Right-handed alpha
Helix 21
AC3
A
378 383Right-handed alpha
Helix 22
AC4
A
386 390Right-handed 310
Helix 23
AC5
A
392 411Right-handed alpha
Helix 24
AC6
A
416 424Right-handed alpha
Helix 25
AC7
A
428 463Right-handed alpha
Helix 26
AC8
A
464 503Right-handed alpha
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There are 3 sheets in PDB entry 9J3N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
112 115parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
112 115parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
107 108anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 20first strand
Strand 2
B
78 84anti-parallel
Strand 3
B
69 73anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il