Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3O entry

There are 2 chains in PDB entry 9J3O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8GLN 503
B
 GLU 1HIS 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9J3O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
26 52Right-handed alpha
Helix 4
AA4
A
63 70Right-handed alpha
Helix 5
AA5
A
70 89Right-handed alpha
Helix 6
AA6
A
90 112Right-handed alpha
Helix 7
AA7
A
116 121Right-handed alpha
Helix 8
AA8
A
127 133Right-handed 310
Helix 9
AA9
A
137 146Right-handed alpha
Helix 10
AB1
A
146 164Right-handed alpha
Helix 11
AB2
A
166 176Right-handed alpha
Helix 12
AB3
A
177 185Right-handed alpha
Helix 13
AB4
A
188 210Right-handed alpha
Helix 14
AB5
A
221 248Right-handed alpha
Helix 15
AB6
A
257 266Right-handed alpha
Helix 16
AB7
A
273 281Right-handed alpha
Helix 17
AB8
A
284 307Right-handed alpha
Helix 18
AB9
A
307 316Right-handed alpha
Helix 19
AC1
A
318 343Right-handed alpha
Helix 20
AC2
A
343 352Right-handed alpha
Helix 21
AC3
A
353 377Right-handed alpha
Helix 22
AC4
A
379 383Right-handed 310
Helix 23
AC5
A
385 390Right-handed 310
Helix 24
AC6
A
392 407Right-handed alpha
Helix 25
AC7
A
415 424Right-handed alpha
Helix 26
AC8
A
428 433Right-handed alpha
Helix 27
AC9
A
433 442Right-handed alpha
Helix 28
AD1
A
444 460Right-handed alpha
Helix 29
AD2
A
464 467Right-handed 310
Helix 30
AD3
A
468 501Right-handed alpha
Helix 31
AD4
B
28 30Right-handed 310
Helix 32
AD5
B
87 91Right-handed 310
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There are 3 sheets in PDB entry 9J3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
17 24anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
68 73anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
112 116parallel
Strand 3
B
92 94anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
32 39anti-parallel
Strand 3
B
96 100anti-parallel
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