Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J3P entry

There are 2 chains in PDB entry 9J3P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 42	PRO 418
B	GLU 42	THR 294

There are 70 helices in PDB entry 9J3P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	49	Right-handed alpha
Helix 2	AA2	A	49	72	Right-handed alpha
Helix 3	AA3	A	81	94	Right-handed alpha
Helix 4	AA4	A	97	108	Right-handed alpha
Helix 5	AA5	A	109	113	Right-handed 310
Helix 6	AA6	A	117	130	Right-handed alpha
Helix 7	AA7	A	131	134	Right-handed 310
Helix 8	AA8	A	151	163	Right-handed alpha
Helix 9	AA9	A	172	189	Right-handed alpha
Helix 10	AB1	A	222	226	Right-handed 310
Helix 11	AB2	A	286	293	Right-handed alpha
Helix 12	AB3	A	294	305	Right-handed alpha
Helix 13	AB4	A	325	331	Right-handed alpha
Helix 14	AB5	A	334	339	Right-handed 310
Helix 15	AB6	B	45	48	Right-handed 310
Helix 16	AB7	B	49	73	Right-handed alpha
Helix 17	AB8	B	81	93	Right-handed alpha
Helix 18	AB9	B	94	96	Right-handed 310
Helix 19	AC1	B	97	108	Right-handed alpha
Helix 20	AC2	B	116	130	Right-handed alpha
Helix 21	AC3	B	131	134	Right-handed 310
Helix 22	AC4	B	151	163	Right-handed alpha
Helix 23	AC5	B	172	189	Right-handed alpha
Helix 24	AC6	B	222	226	Right-handed 310
Helix 25	AC7	B	286	293	Right-handed alpha
Helix 26	AC8	B	294	305	Right-handed alpha
Helix 27	AC9	B	325	331	Right-handed alpha
Helix 28	AD1	B	334	339	Right-handed 310
Helix 29	AD2	C	44	49	Right-handed alpha
Helix 30	AD3	C	49	73	Right-handed alpha
Helix 31	AD4	C	81	95	Right-handed alpha
Helix 32	AD5	C	97	108	Right-handed alpha
Helix 33	AD6	C	109	113	Right-handed 310
Helix 34	AD7	C	117	130	Right-handed alpha
Helix 35	AD8	C	131	134	Right-handed 310
Helix 36	AD9	C	151	163	Right-handed alpha
Helix 37	AE1	C	172	188	Right-handed alpha
Helix 38	AE2	C	222	226	Right-handed 310
Helix 39	AE3	C	286	291	Right-handed alpha
Helix 40	AE4	C	294	305	Right-handed alpha
Helix 41	AE5	C	325	331	Right-handed alpha
Helix 42	AE6	C	334	338	Right-handed 310
Helix 43	AE7	D	45	48	Right-handed 310
Helix 44	AE8	D	49	73	Right-handed alpha
Helix 45	AE9	D	81	93	Right-handed alpha
Helix 46	AF1	D	94	96	Right-handed 310
Helix 47	AF2	D	97	108	Right-handed alpha
Helix 48	AF3	D	117	130	Right-handed alpha
Helix 49	AF4	D	131	134	Right-handed 310
Helix 50	AF5	D	151	163	Right-handed alpha
Helix 51	AF6	D	172	189	Right-handed alpha
Helix 52	AF7	D	222	226	Right-handed 310
Helix 53	AF8	D	286	292	Right-handed alpha
Helix 54	AF9	D	294	305	Right-handed alpha
Helix 55	AG1	D	325	331	Right-handed alpha
Helix 56	AG2	D	332	333	Right-handed 310
Helix 57	AG3	D	334	339	Right-handed 310
Helix 58	AG4	E	44	49	Right-handed alpha
Helix 59	AG5	E	49	72	Right-handed alpha
Helix 60	AG6	E	81	93	Right-handed alpha
Helix 61	AG7	E	94	96	Right-handed 310
Helix 62	AG8	E	97	108	Right-handed alpha
Helix 63	AG9	E	117	130	Right-handed alpha
Helix 64	AH1	E	131	134	Right-handed 310
Helix 65	AH2	E	151	163	Right-handed alpha
Helix 66	AH3	E	172	188	Right-handed alpha
Helix 67	AH4	E	286	293	Right-handed alpha
Helix 68	AH5	E	294	305	Right-handed alpha
Helix 69	AH6	E	325	332	Right-handed alpha
Helix 70	AH7	E	334	339	Right-handed 310

There are 19 sheets in PDB entry 9J3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	406	412	anti-parallel
Strand 3	A	394	400	anti-parallel
Strand 4	A	272	279	anti-parallel
Strand 5	A	261	268	anti-parallel
Strand 6	A	237	256	anti-parallel
Strand 7	A	227	234	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	406	412	anti-parallel
Strand 3	A	394	400	anti-parallel
Strand 4	A	272	279	anti-parallel
Strand 5	A	261	268	anti-parallel
Strand 6	A	237	256	anti-parallel
Strand 7	A	306	315	anti-parallel
Strand 8	A	386	389	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	136	144	parallel
Strand 3	A	205	214	anti-parallel
Strand 4	A	353	364	parallel
Strand 5	A	317	324	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	368	370	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	406	412	anti-parallel
Strand 3	B	394	400	anti-parallel
Strand 4	B	272	279	anti-parallel
Strand 5	B	261	268	anti-parallel
Strand 6	B	238	256	anti-parallel
Strand 7	B	227	232	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	406	412	anti-parallel
Strand 3	B	394	400	anti-parallel
Strand 4	B	272	279	anti-parallel
Strand 5	B	261	268	anti-parallel
Strand 6	B	238	256	anti-parallel
Strand 7	B	306	315	anti-parallel
Strand 8	B	385	389	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	168	first strand
Strand 2	B	136	144	parallel
Strand 3	B	205	214	anti-parallel
Strand 4	B	353	364	parallel
Strand 5	B	317	324	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	368	370	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	406	412	anti-parallel
Strand 3	C	394	400	anti-parallel
Strand 4	C	272	279	anti-parallel
Strand 5	C	261	268	anti-parallel
Strand 6	C	238	256	anti-parallel
Strand 7	C	227	232	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	406	412	anti-parallel
Strand 3	C	394	400	anti-parallel
Strand 4	C	272	279	anti-parallel
Strand 5	C	261	268	anti-parallel
Strand 6	C	238	256	anti-parallel
Strand 7	C	306	315	anti-parallel
Strand 8	C	386	389	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	136	144	parallel
Strand 3	C	205	214	anti-parallel
Strand 4	C	353	364	parallel
Strand 5	C	317	324	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	219	first strand
Strand 2	C	368	370	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	406	412	anti-parallel
Strand 3	D	394	400	anti-parallel
Strand 4	D	272	279	anti-parallel
Strand 5	D	261	268	anti-parallel
Strand 6	D	238	256	anti-parallel
Strand 7	D	227	232	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	406	412	anti-parallel
Strand 3	D	394	400	anti-parallel
Strand 4	D	272	279	anti-parallel
Strand 5	D	261	268	anti-parallel
Strand 6	D	238	256	anti-parallel
Strand 7	D	306	315	anti-parallel
Strand 8	D	386	389	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	168	first strand
Strand 2	D	136	144	parallel
Strand 3	D	205	214	anti-parallel
Strand 4	D	353	364	parallel
Strand 5	D	317	324	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	219	first strand
Strand 2	D	368	370	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	406	412	anti-parallel
Strand 3	E	394	400	anti-parallel
Strand 4	E	272	279	anti-parallel
Strand 5	E	261	268	anti-parallel
Strand 6	E	239	256	anti-parallel
Strand 7	E	227	231	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	406	412	anti-parallel
Strand 3	E	394	400	anti-parallel
Strand 4	E	272	279	anti-parallel
Strand 5	E	261	268	anti-parallel
Strand 6	E	239	256	anti-parallel
Strand 7	E	306	315	anti-parallel
Strand 8	E	387	389	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	E	136	144	parallel
Strand 3	E	205	214	anti-parallel
Strand 4	E	353	364	parallel
Strand 5	E	317	324	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J3P

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3P