Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3Q entry

There is 1 chain in PDB entry 9J3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35PRO 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9J3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 49Right-handed alpha
Helix 2
AA2
A
49 73Right-handed alpha
Helix 3
AA3
A
82 93Right-handed alpha
Helix 4
AA4
A
94 96Right-handed 310
Helix 5
AA5
A
97 108Right-handed alpha
Helix 6
AA6
A
109 113Right-handed 310
Helix 7
AA7
A
117 130Right-handed alpha
Helix 8
AA8
A
131 134Right-handed 310
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
172 188Right-handed alpha
Helix 11
AB2
A
222 226Right-handed 310
Helix 12
AB3
A
257 259Right-handed 310
Helix 13
AB4
A
286 293Right-handed alpha
Helix 14
AB5
A
294 305Right-handed alpha
Helix 15
AB6
A
325 331Right-handed alpha
Helix 16
AB7
A
334 339Right-handed 310
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There are 4 sheets in PDB entry 9J3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
406 412anti-parallel
Strand 3
A
394 400anti-parallel
Strand 4
A
272 279anti-parallel
Strand 5
A
261 268anti-parallel
Strand 6
A
238 256anti-parallel
Strand 7
A
227 232anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
406 412anti-parallel
Strand 3
A
394 400anti-parallel
Strand 4
A
272 279anti-parallel
Strand 5
A
261 268anti-parallel
Strand 6
A
238 256anti-parallel
Strand 7
A
306 315anti-parallel
Strand 8
A
386 389parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
136 144parallel
Strand 3
A
205 214anti-parallel
Strand 4
A
353 364parallel
Strand 5
A
317 324anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
368 370parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il