Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3U entry

There are 4 chains in PDB entry 9J3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 256
A
 ASP 258HIS 457
B
 MET 1LYS 256
B
 ASP 258HIS 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9J3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 31Right-handed alpha
Helix 2
AA2
A
34 38Right-handed 310
Helix 3
AA3
A
39 43Right-handed 310
Helix 4
AA4
A
57 65Right-handed alpha
Helix 5
AA5
A
74 89Right-handed alpha
Helix 6
AA6
A
98 111Right-handed alpha
Helix 7
AA7
A
123 133Right-handed alpha
Helix 8
AA8
A
142 147Right-handed 310
Helix 9
AA9
A
159 171Right-handed alpha
Helix 10
AB1
A
193 208Right-handed alpha
Helix 11
AB2
A
217 229Right-handed alpha
Helix 12
AB3
A
236 247Right-handed alpha
Helix 13
AB4
A
271 286Right-handed alpha
Helix 14
AB5
A
295 310Right-handed alpha
Helix 15
AB6
A
311 332Right-handed alpha
Helix 16
AB7
A
349 353Right-handed alpha
Helix 17
AB8
A
357 360Right-handed 310
Helix 18
AB9
A
361 375Right-handed alpha
Helix 19
AC1
A
382 387Right-handed alpha
Helix 20
AC2
A
413 430Right-handed alpha
Helix 21
AC3
A
431 434Right-handed 310
Helix 22
AC4
A
446 451Right-handed alpha
Helix 23
AC5
B
20 31Right-handed alpha
Helix 24
AC6
B
34 38Right-handed 310
Helix 25
AC7
B
39 43Right-handed 310
Helix 26
AC8
B
57 65Right-handed alpha
Helix 27
AC9
B
74 89Right-handed alpha
Helix 28
AD1
B
98 111Right-handed alpha
Helix 29
AD2
B
123 133Right-handed alpha
Helix 30
AD3
B
142 147Right-handed 310
Helix 31
AD4
B
159 171Right-handed alpha
Helix 32
AD5
B
193 208Right-handed alpha
Helix 33
AD6
B
217 229Right-handed alpha
Helix 34
AD7
B
236 246Right-handed alpha
Helix 35
AD8
B
271 286Right-handed alpha
Helix 36
AD9
B
295 310Right-handed alpha
Helix 37
AE1
B
311 332Right-handed alpha
Helix 38
AE2
B
349 353Right-handed alpha
Helix 39
AE3
B
357 360Right-handed 310
Helix 40
AE4
B
361 375Right-handed alpha
Helix 41
AE5
B
382 387Right-handed alpha
Helix 42
AE6
B
413 430Right-handed alpha
Helix 43
AE7
B
431 434Right-handed 310
Helix 44
AE8
B
446 451Right-handed alpha
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There are 8 sheets in PDB entry 9J3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
376 377parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
250 254anti-parallel
Strand 4
A
211 214parallel
Strand 5
A
175 181parallel
Strand 6
A
116 119parallel
Strand 7
A
136 139parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
402 406anti-parallel
Strand 3
A
379 381anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
452 455anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
376 377parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 96first strand
Strand 2
B
265 269anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
211 214parallel
Strand 5
B
175 181parallel
Strand 6
B
116 119parallel
Strand 7
B
136 139parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 348first strand
Strand 2
B
402 406anti-parallel
Strand 3
B
379 381anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 441first strand
Strand 2
B
452 455anti-parallel
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