Analysis of interatomic Contacts of Structural Units in PDB entry:
9J3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J3W entry

There is 1 chain in PDB entry 9J3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8LYS 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9J3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
36 41Right-handed alpha
Helix 3
AA3
A
52 59Right-handed alpha
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
75 90Right-handed alpha
Helix 6
AA6
A
100 105Right-handed alpha
Helix 7
AA7
A
113 130Right-handed alpha
Helix 8
AA8
A
144 150Right-handed alpha
Helix 9
AA9
A
156 174Right-handed alpha
Helix 10
AB1
A
185 195Right-handed alpha
Helix 11
AB2
A
205 231Right-handed alpha
Helix 12
AB3
A
251 266Right-handed alpha
Helix 13
AB4
A
266 274Right-handed alpha
Helix 14
AB5
A
279 287Right-handed alpha
Helix 15
AB6
A
295 301Right-handed alpha
Helix 16
AB7
A
347 361Right-handed alpha
Helix 17
AB8
A
387 407Right-handed alpha
Helix 18
AB9
A
424 431Right-handed 310
Helix 19
AC1
A
448 465Right-handed alpha
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There are 3 sheets in PDB entry 9J3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
94 98parallel
Strand 3
A
133 139parallel
Strand 4
A
179 184parallel
Strand 5
A
235 241parallel
Strand 6
A
306 310parallel
Strand 7
A
366 371parallel
Strand 8
A
411 417parallel
Strand 9
A
30 34parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 247first strand
Strand 2
A
315 319parallel
Strand 3
A
328 330anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 438first strand
Strand 2
A
445 447anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il