Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J4C entry

There are 3 chains in PDB entry 9J4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 35ASN 689
L
 GLN 1CYS 213
H
 GLU 1SER 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9J4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
132 137Right-handed alpha
Helix 2
AA2
A
232 239Right-handed alpha
Helix 3
AA3
A
321 328Right-handed alpha
Helix 4
AA4
A
362 379Right-handed alpha
Helix 5
AA5
A
520 525Right-handed alpha
Helix 6
AA6
A
526 528Right-handed 310
Helix 7
AA7
A
621 626Right-handed alpha
Helix 8
AA8
A
666 672Right-handed alpha
Helix 9
AA9
L
78 83Right-handed 310
Helix 10
AB1
L
120 127Right-handed alpha
Helix 11
AB2
H
87 91Right-handed 310
Helix 12
AB3
H
136 142Right-handed alpha
Helix 13
AB4
H
165 167Right-handed 310
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There are 25 sheets in PDB entry 9J4C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
506 511anti-parallel
Strand 3
A
498 502anti-parallel
Strand 4
A
491 492anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
63 67anti-parallel
Strand 3
A
70 71anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
109 111anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 121first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
140 142anti-parallel
Strand 4
A
148 150anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
185 188anti-parallel
Strand 3
A
201 204anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
255 263anti-parallel
Strand 3
A
278 286anti-parallel
Strand 4
A
296 304anti-parallel
Strand 5
A
307 314anti-parallel
Strand 6
A
340 343anti-parallel
Strand 7
A
355 361anti-parallel
Strand 8
A
421 422first strand
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 318first strand
Strand 2
A
336 337anti-parallel
Strand 3
A
355 361anti-parallel
Strand 4
A
340 343anti-parallel
Strand 5
A
307 314anti-parallel
Strand 6
A
296 304anti-parallel
Strand 7
A
424 427first strand
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 440first strand
Strand 2
A
447 452anti-parallel
Strand 3
A
456 461anti-parallel
Strand 4
A
473 479anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 535first strand
Strand 2
A
556 557anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 585first strand
Strand 2
A
614 616anti-parallel
Strand 3
A
609 611anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 598first strand
Strand 2
A
637 644anti-parallel
Strand 3
A
652 657anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
678 680first strand
Strand 2
A
685 687anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
69 74anti-parallel
Strand 4
L
61 64anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 105parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
52 53first strand
Strand 2
L
44 48anti-parallel
Strand 3
L
32 37anti-parallel
Strand 4
L
84 89anti-parallel
Strand 5
L
96 97anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 117first strand
Strand 2
L
131 136anti-parallel
Strand 3
L
173 178anti-parallel
Strand 4
L
158 159anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
152 153first strand
Strand 2
L
145 149anti-parallel
Strand 3
L
190 197anti-parallel
Strand 4
L
200 205anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
152 153first strand
Strand 2
L
145 149anti-parallel
Strand 3
L
190 197anti-parallel
Strand 4
L
208 209anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
22 23anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
17 19anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 6first strand
Strand 2
H
22 23anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
70 73anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 50first strand
Strand 2
H
35 39anti-parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
110 112anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
45 50first strand
Strand 2
H
35 39anti-parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
117 118anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
145 154first strand
Strand 2
H
183 192anti-parallel
Strand 3
H
172 173anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
145 154first strand
Strand 2
H
183 192anti-parallel
Strand 3
H
178 180anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
160 163first strand
Strand 2
H
204 208anti-parallel
Strand 3
H
213 215anti-parallel
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