Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J4H entry

There are 8 chains in PDB entry 9J4H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	HIS 225
A	THR 227	HIS 412
B	ASP 3	HIS 225
B	THR 227	HIS 412
C	ASP 3	HIS 225
C	THR 227	LYS 414
D	ASP 3	HIS 225
D	THR 227	LEU 411

There are 83 helices in PDB entry 9J4H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	25	Right-handed alpha
Helix 2	AA2	A	36	44	Right-handed alpha
Helix 3	AA3	A	45	50	Right-handed 310
Helix 4	AA4	A	64	83	Right-handed alpha
Helix 5	AA5	A	93	106	Right-handed alpha
Helix 6	AA6	A	122	126	Right-handed 310
Helix 7	AA7	A	130	136	Right-handed alpha
Helix 8	AA8	A	151	163	Right-handed alpha
Helix 9	AA9	A	179	191	Right-handed alpha
Helix 10	AB1	A	201	207	Right-handed alpha
Helix 11	AB2	A	225	229	Right-handed 310
Helix 12	AB3	A	240	252	Right-handed alpha
Helix 13	AB4	A	260	275	Right-handed alpha
Helix 14	AB5	A	276	300	Right-handed alpha
Helix 15	AB6	A	307	309	Right-handed 310
Helix 16	AB7	A	320	323	Right-handed 310
Helix 17	AB8	A	325	335	Right-handed alpha
Helix 18	AB9	A	362	369	Right-handed alpha
Helix 19	AC1	A	371	388	Right-handed alpha
Helix 20	AC2	A	391	409	Right-handed alpha
Helix 21	AC3	B	3	7	Right-handed 310
Helix 22	AC4	B	8	24	Right-handed alpha
Helix 23	AC5	B	36	44	Right-handed alpha
Helix 24	AC6	B	45	50	Right-handed 310
Helix 25	AC7	B	64	83	Right-handed alpha
Helix 26	AC8	B	93	106	Right-handed alpha
Helix 27	AC9	B	122	126	Right-handed 310
Helix 28	AD1	B	130	136	Right-handed alpha
Helix 29	AD2	B	151	163	Right-handed alpha
Helix 30	AD3	B	179	191	Right-handed alpha
Helix 31	AD4	B	201	207	Right-handed alpha
Helix 32	AD5	B	225	229	Right-handed 310
Helix 33	AD6	B	240	252	Right-handed alpha
Helix 34	AD7	B	260	276	Right-handed alpha
Helix 35	AD8	B	276	300	Right-handed alpha
Helix 36	AD9	B	307	309	Right-handed 310
Helix 37	AE1	B	320	323	Right-handed 310
Helix 38	AE2	B	325	335	Right-handed alpha
Helix 39	AE3	B	362	368	Right-handed alpha
Helix 40	AE4	B	371	388	Right-handed alpha
Helix 41	AE5	B	391	409	Right-handed alpha
Helix 42	AE6	C	8	24	Right-handed alpha
Helix 43	AE7	C	36	44	Right-handed alpha
Helix 44	AE8	C	45	50	Right-handed 310
Helix 45	AE9	C	66	83	Right-handed alpha
Helix 46	AF1	C	93	106	Right-handed alpha
Helix 47	AF2	C	117	120	Right-handed 310
Helix 48	AF3	C	122	126	Right-handed 310
Helix 49	AF4	C	130	136	Right-handed alpha
Helix 50	AF5	C	151	163	Right-handed alpha
Helix 51	AF6	C	179	190	Right-handed alpha
Helix 52	AF7	C	201	207	Right-handed alpha
Helix 53	AF8	C	225	229	Right-handed 310
Helix 54	AF9	C	240	252	Right-handed alpha
Helix 55	AG1	C	260	276	Right-handed alpha
Helix 56	AG2	C	276	300	Right-handed alpha
Helix 57	AG3	C	307	309	Right-handed 310
Helix 58	AG4	C	320	323	Right-handed 310
Helix 59	AG5	C	325	335	Right-handed alpha
Helix 60	AG6	C	362	369	Right-handed alpha
Helix 61	AG7	C	371	388	Right-handed alpha
Helix 62	AG8	C	391	409	Right-handed alpha
Helix 63	AG9	D	3	7	Right-handed 310
Helix 64	AH1	D	8	24	Right-handed alpha
Helix 65	AH2	D	36	44	Right-handed alpha
Helix 66	AH3	D	45	50	Right-handed 310
Helix 67	AH4	D	64	83	Right-handed alpha
Helix 68	AH5	D	93	104	Right-handed alpha
Helix 69	AH6	D	122	126	Right-handed 310
Helix 70	AH7	D	130	136	Right-handed alpha
Helix 71	AH8	D	151	163	Right-handed alpha
Helix 72	AH9	D	179	190	Right-handed alpha
Helix 73	AI1	D	201	207	Right-handed alpha
Helix 74	AI2	D	225	229	Right-handed 310
Helix 75	AI3	D	240	252	Right-handed alpha
Helix 76	AI4	D	260	275	Right-handed alpha
Helix 77	AI5	D	276	300	Right-handed alpha
Helix 78	AI6	D	307	309	Right-handed 310
Helix 79	AI7	D	320	323	Right-handed 310
Helix 80	AI8	D	325	336	Right-handed alpha
Helix 81	AI9	D	362	369	Right-handed alpha
Helix 82	AJ1	D	371	388	Right-handed alpha
Helix 83	AJ2	D	391	409	Right-handed alpha

There are 16 sheets in PDB entry 9J4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	338	339	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	58	59	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	234	238	anti-parallel
Strand 3	A	219	223	anti-parallel
Strand 4	A	193	197	parallel
Strand 5	A	166	169	parallel
Strand 6	A	111	115	parallel
Strand 7	A	137	141	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	314	318	anti-parallel
Strand 3	A	357	361	anti-parallel
Strand 4	A	341	342	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	338	339	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	58	59	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	234	238	anti-parallel
Strand 3	B	219	223	anti-parallel
Strand 4	B	193	197	parallel
Strand 5	B	166	169	parallel
Strand 6	B	111	115	parallel
Strand 7	B	137	141	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	305	first strand
Strand 2	B	314	318	anti-parallel
Strand 3	B	357	361	anti-parallel
Strand 4	B	341	343	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	338	339	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	58	59	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	234	238	anti-parallel
Strand 3	C	219	223	anti-parallel
Strand 4	C	193	197	parallel
Strand 5	C	166	169	parallel
Strand 6	C	111	115	parallel
Strand 7	C	137	141	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	305	first strand
Strand 2	C	314	318	anti-parallel
Strand 3	C	357	361	anti-parallel
Strand 4	C	341	343	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	338	339	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	58	59	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	234	238	anti-parallel
Strand 3	D	219	223	anti-parallel
Strand 4	D	193	197	parallel
Strand 5	D	166	169	parallel
Strand 6	D	111	115	parallel
Strand 7	D	137	141	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	304	305	first strand
Strand 2	D	314	318	anti-parallel
Strand 3	D	357	361	anti-parallel
Strand 4	D	341	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J4H

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4H