Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J4I entry

There are 3 chains in PDB entry 9J4I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9PRO 411
B
 PRO 9PRO 411
C
 PRO 9PRO 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9J4I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 50Right-handed alpha
Helix 2
AA2
A
92 99Right-handed alpha
Helix 3
AA3
A
304 308Right-handed 310
Helix 4
AA4
A
340 344Right-handed 310
Helix 5
AA5
A
394 396Right-handed 310
Helix 6
AA6
B
30 50Right-handed alpha
Helix 7
AA7
B
92 99Right-handed alpha
Helix 8
AA8
B
304 308Right-handed 310
Helix 9
AA9
B
340 344Right-handed 310
Helix 10
AB1
B
394 396Right-handed 310
Helix 11
AB2
C
30 50Right-handed alpha
Helix 12
AB3
C
92 99Right-handed alpha
Helix 13
AB4
C
304 308Right-handed 310
Helix 14
AB5
C
340 344Right-handed 310
Helix 15
AB6
C
394 396Right-handed 310
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There are 12 sheets in PDB entry 9J4I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
59 62parallel
Strand 3
A
81 84parallel
Strand 4
A
140 142parallel
Strand 5
A
175 177parallel
Strand 6
A
197 199parallel
Strand 7
A
220 222parallel
Strand 8
A
244 246parallel
Strand 9
A
267 269parallel
Strand 10
A
291 293parallel
Strand 11
A
329 331parallel
Strand 12
A
363 365parallel
Strand 13
A
388 390parallel
Strand 14
A
406 408parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 70first strand
Strand 2
A
112 116parallel
Strand 3
A
145 147parallel
Strand 4
A
180 182parallel
Strand 5
A
202 204parallel
Strand 6
A
225 227parallel
Strand 7
A
249 251parallel
Strand 8
A
272 275parallel
Strand 9
A
296 299parallel
Strand 10
A
334 337parallel
Strand 11
A
368 371parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
124 128parallel
Strand 3
A
163 167parallel
Strand 4
A
186 194parallel
Strand 5
A
208 217parallel
Strand 6
A
240 241parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
171 172parallel
Strand 3
A
186 194parallel
Strand 4
A
208 217parallel
Strand 5
A
233 238parallel
Strand 6
A
256 261parallel
Strand 7
A
281 284parallel
Strand 8
A
321 324parallel
Strand 9
A
352 358parallel
Strand 10
A
376 380parallel
Strand 11
A
398 400parallel
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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
59 62parallel
Strand 3
B
81 84parallel
Strand 4
B
140 142parallel
Strand 5
B
175 177parallel
Strand 6
B
197 199parallel
Strand 7
B
220 222parallel
Strand 8
B
244 246parallel
Strand 9
B
267 269parallel
Strand 10
B
291 293parallel
Strand 11
B
329 331parallel
Strand 12
B
363 365parallel
Strand 13
B
388 390parallel
Strand 14
B
406 408parallel
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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 70first strand
Strand 2
B
112 116parallel
Strand 3
B
145 147parallel
Strand 4
B
180 182parallel
Strand 5
B
202 204parallel
Strand 6
B
225 227parallel
Strand 7
B
249 251parallel
Strand 8
B
272 275parallel
Strand 9
B
296 299parallel
Strand 10
B
334 337parallel
Strand 11
B
368 371parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
124 128parallel
Strand 3
B
163 167parallel
Strand 4
B
186 194parallel
Strand 5
B
208 217parallel
Strand 6
B
240 241parallel
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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
171 172parallel
Strand 3
B
186 194parallel
Strand 4
B
208 217parallel
Strand 5
B
233 238parallel
Strand 6
B
256 261parallel
Strand 7
B
281 284parallel
Strand 8
B
321 324parallel
Strand 9
B
352 358parallel
Strand 10
B
376 380parallel
Strand 11
B
398 400parallel
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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
59 62parallel
Strand 3
C
81 84parallel
Strand 4
C
140 142parallel
Strand 5
C
175 177parallel
Strand 6
C
197 199parallel
Strand 7
C
220 222parallel
Strand 8
C
244 246parallel
Strand 9
C
267 269parallel
Strand 10
C
291 293parallel
Strand 11
C
329 331parallel
Strand 12
C
363 365parallel
Strand 13
C
388 390parallel
Strand 14
C
406 408parallel
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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 70first strand
Strand 2
C
112 116parallel
Strand 3
C
145 147parallel
Strand 4
C
180 182parallel
Strand 5
C
202 204parallel
Strand 6
C
225 227parallel
Strand 7
C
249 251parallel
Strand 8
C
272 275parallel
Strand 9
C
296 299parallel
Strand 10
C
334 337parallel
Strand 11
C
368 371parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 76first strand
Strand 2
C
124 128parallel
Strand 3
C
163 167parallel
Strand 4
C
186 194parallel
Strand 5
C
208 217parallel
Strand 6
C
240 241parallel
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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 137first strand
Strand 2
C
171 172parallel
Strand 3
C
186 194parallel
Strand 4
C
208 217parallel
Strand 5
C
233 238parallel
Strand 6
C
256 261parallel
Strand 7
C
281 284parallel
Strand 8
C
321 324parallel
Strand 9
C
352 358parallel
Strand 10
C
376 380parallel
Strand 11
C
398 400parallel
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