Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J4P entry

There are 2 chains in PDB entry 9J4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1LEU 446
A
 GLN 3SER 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9J4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 24Right-handed alpha
Helix 2
AA2
B
29 42Right-handed alpha
Helix 3
AA3
B
46 56Right-handed alpha
Helix 4
AA4
B
82 87Right-handed alpha
Helix 5
AA5
B
87 101Right-handed alpha
Helix 6
AA6
B
103 120Right-handed alpha
Helix 7
AA7
B
123 138Right-handed alpha
Helix 8
AA8
B
144 158Right-handed alpha
Helix 9
AA9
B
160 173Right-handed alpha
Helix 10
AB1
B
186 207Right-handed alpha
Helix 11
AB2
B
209 227Right-handed alpha
Helix 12
AB3
B
231 249Right-handed alpha
Helix 13
AB4
B
250 260Right-handed alpha
Helix 14
AB5
B
265 271Right-handed alpha
Helix 15
AB6
B
273 288Right-handed alpha
Helix 16
AB7
B
292 312Right-handed alpha
Helix 17
AB8
B
317 319Right-handed 310
Helix 18
AB9
B
320 337Right-handed alpha
Helix 19
AC1
B
347 370Right-handed alpha
Helix 20
AC2
B
372 394Right-handed alpha
Helix 21
AC3
B
397 420Right-handed alpha
Helix 22
AC4
B
434 439Right-handed 310
Helix 23
AC5
B
440 444Right-handed 310
Helix 24
AC6
A
4 12Right-handed alpha
Helix 25
AC7
A
15 25Right-handed alpha
Helix 26
AC8
A
28 35Right-handed alpha
Helix 27
AC9
A
113 141Right-handed alpha
Helix 28
AD1
A
192 208Right-handed alpha
Helix 29
AD2
A
248 260Right-handed alpha
Helix 30
AD3
A
265 271Right-handed alpha
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There are 3 sheets in PDB entry 9J4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
63 76anti-parallel
Strand 3
A
88 93anti-parallel
Strand 4
A
103 107anti-parallel
Strand 5
A
163 171anti-parallel
Strand 6
A
153 158anti-parallel
Strand 7
A
48 58anti-parallel
Strand 8
A
63 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
228 230parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
234 238anti-parallel
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