Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J4R entry

There are 3 chains in PDB entry 9J4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24PHE 516
B
 MET 1GLY 340
C
 MET 1GLY 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 9J4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 38Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
52 85Right-handed alpha
Helix 4
AA4
A
90 100Right-handed alpha
Helix 5
AA5
A
101 104Right-handed 310
Helix 6
AA6
A
105 116Right-handed alpha
Helix 7
AA7
A
129 156Right-handed alpha
Helix 8
AA8
A
158 168Right-handed alpha
Helix 9
AA9
A
171 179Right-handed alpha
Helix 10
AB1
A
179 202Right-handed alpha
Helix 11
AB2
A
203 209Right-handed alpha
Helix 12
AB3
A
213 223Right-handed alpha
Helix 13
AB4
A
227 256Right-handed alpha
Helix 14
AB5
A
263 267Right-handed 310
Helix 15
AB6
A
277 285Right-handed alpha
Helix 16
AB7
A
286 293Right-handed alpha
Helix 17
AB8
A
293 304Right-handed alpha
Helix 18
AB9
A
305 307Right-handed 310
Helix 19
AC1
A
308 310Right-handed 310
Helix 20
AC2
A
311 347Right-handed alpha
Helix 21
AC3
A
349 365Right-handed alpha
Helix 22
AC4
A
366 381Right-handed alpha
Helix 23
AC5
A
382 386Right-handed 310
Helix 24
AC6
A
388 400Right-handed alpha
Helix 25
AC7
A
400 415Right-handed alpha
Helix 26
AC8
A
416 427Right-handed alpha
Helix 27
AC9
A
429 438Right-handed alpha
Helix 28
AD1
A
438 459Right-handed alpha
Helix 29
AD2
A
461 468Right-handed alpha
Helix 30
AD3
A
474 485Right-handed alpha
Helix 31
AD4
A
487 516Right-handed alpha
Helix 32
AD5
B
44 53Right-handed alpha
Helix 33
AD6
B
74 79Right-handed alpha
Helix 34
AD7
B
94 100Right-handed alpha
Helix 35
AD8
B
101 103Right-handed 310
Helix 36
AD9
B
107 120Right-handed alpha
Helix 37
AE1
B
133 147Right-handed alpha
Helix 38
AE2
B
166 181Right-handed alpha
Helix 39
AE3
B
191 199Right-handed alpha
Helix 40
AE4
B
215 222Right-handed alpha
Helix 41
AE5
B
225 232Right-handed alpha
Helix 42
AE6
B
269 271Right-handed 310
Helix 43
AE7
C
44 53Right-handed alpha
Helix 44
AE8
C
74 78Right-handed 310
Helix 45
AE9
C
96 102Right-handed alpha
Helix 46
AF1
C
108 119Right-handed alpha
Helix 47
AF2
C
128 132Right-handed 310
Helix 48
AF3
C
133 147Right-handed alpha
Helix 49
AF4
C
158 162Right-handed 310
Helix 50
AF5
C
163 182Right-handed alpha
Helix 51
AF6
C
191 198Right-handed alpha
Helix 52
AF7
C
215 222Right-handed alpha
Helix 53
AF8
C
225 233Right-handed alpha
Helix 54
AF9
C
269 271Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 9J4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 28first strand
Strand 2
B
7 14anti-parallel
Strand 3
B
60 65anti-parallel
Strand 4
B
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
152 156parallel
Strand 3
B
184 188parallel
Strand 4
B
34 38parallel
Strand 5
B
201 206parallel
Strand 6
B
209 214anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 338first strand
Strand 2
B
252 268anti-parallel
Strand 3
B
236 249anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
326 331anti-parallel
Strand 3
B
283 291anti-parallel
Strand 4
B
296 302anti-parallel
Strand 5
B
310 315anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 28first strand
Strand 2
C
7 16anti-parallel
Strand 3
C
60 65anti-parallel
Strand 4
C
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
152 156parallel
Strand 3
C
184 188parallel
Strand 4
C
34 38parallel
Strand 5
C
201 206parallel
Strand 6
C
209 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 255first strand
Strand 2
C
246 249anti-parallel
Strand 3
C
236 242anti-parallel
Strand 4
C
262 268anti-parallel
Strand 5
C
336 338anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 276first strand
Strand 2
C
326 331anti-parallel
Strand 3
C
283 291anti-parallel
Strand 4
C
296 302anti-parallel
Strand 5
C
310 315anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il