Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J4S entry

There are 10 chains in PDB entry 9J4S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	SER 2	ALA 243
I	SER 3	SER 203
A	SER 2	ALA 243
B	SER 3	PRO 204
C	SER 2	GLU 275
D	MET 1	MET 100
E	SER 1	LEU 9
F	SER 2	GLU 275
H	ILE 2	MET 100
J	SER 1	LEU 9

There are 26 helices in PDB entry 9J4S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	82	86	Right-handed 310
Helix 2	AA2	G	116	120	Right-handed 310
Helix 3	AA3	G	131	139	Right-handed alpha
Helix 4	AA4	G	198	203	Right-handed alpha
Helix 5	AA5	I	82	86	Right-handed 310
Helix 6	AA6	I	166	169	Right-handed 310
Helix 7	AA7	A	82	86	Right-handed 310
Helix 8	AA8	A	116	120	Right-handed 310
Helix 9	AA9	A	131	138	Right-handed alpha
Helix 10	AB1	A	198	203	Right-handed alpha
Helix 11	AB2	B	60	62	Right-handed 310
Helix 12	AB3	B	82	86	Right-handed 310
Helix 13	AB4	B	166	169	Right-handed 310
Helix 14	AB5	C	49	53	Right-handed 310
Helix 15	AB6	C	56	85	Right-handed alpha
Helix 16	AB7	C	138	150	Right-handed alpha
Helix 17	AB8	C	151	163	Right-handed alpha
Helix 18	AB9	C	163	176	Right-handed alpha
Helix 19	AC1	C	176	181	Right-handed alpha
Helix 20	AC2	C	252	255	Right-handed 310
Helix 21	AC3	F	49	55	Right-handed 310
Helix 22	AC4	F	56	85	Right-handed alpha
Helix 23	AC5	F	138	150	Right-handed alpha
Helix 24	AC6	F	151	162	Right-handed alpha
Helix 25	AC7	F	162	175	Right-handed alpha
Helix 26	AC8	F	175	181	Right-handed alpha

There are 38 sheets in PDB entry 9J4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	74	78	anti-parallel
Strand 4	G	64	68	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	109	114	parallel
Strand 3	G	87	94	anti-parallel
Strand 4	G	31	38	anti-parallel
Strand 5	G	42	50	anti-parallel
Strand 6	G	53	57	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	109	114	parallel
Strand 3	G	87	94	anti-parallel
Strand 4	G	104	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	124	128	first strand
Strand 2	G	140	150	anti-parallel
Strand 3	G	188	197	anti-parallel
Strand 4	G	170	172	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	124	128	first strand
Strand 2	G	140	150	anti-parallel
Strand 3	G	188	197	anti-parallel
Strand 4	G	177	178	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	166	first strand
Strand 2	G	155	161	anti-parallel
Strand 3	G	207	214	anti-parallel
Strand 4	G	233	240	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	5	first strand
Strand 2	I	24	25	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	107	112	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	32	38	anti-parallel
Strand 5	I	44	50	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	107	112	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	102	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	21	first strand
Strand 2	I	73	78	anti-parallel
Strand 3	I	64	68	anti-parallel
Strand 4	I	56	58	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	126	first strand
Strand 2	I	134	139	anti-parallel
Strand 3	I	170	179	anti-parallel
Strand 4	I	155	157	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	121	126	first strand
Strand 2	I	134	139	anti-parallel
Strand 3	I	170	179	anti-parallel
Strand 4	I	161	165	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	74	78	anti-parallel
Strand 4	A	64	68	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	109	114	parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	31	37	anti-parallel
Strand 5	A	43	50	anti-parallel
Strand 6	A	53	57	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	109	114	parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	104	105	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	140	150	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	140	150	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	177	178	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	207	214	anti-parallel
Strand 4	A	233	240	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	24	25	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	107	112	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	32	38	anti-parallel
Strand 5	B	44	50	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	107	112	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	102	103	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	21	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	64	68	anti-parallel
Strand 4	B	56	58	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	170	179	anti-parallel
Strand 4	B	155	157	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	125	first strand
Strand 2	B	135	139	anti-parallel
Strand 3	B	170	179	anti-parallel
Strand 4	B	161	165	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	31	37	anti-parallel
Strand 3	C	18	28	anti-parallel
Strand 4	C	3	14	anti-parallel
Strand 5	C	94	103	anti-parallel
Strand 6	C	109	118	anti-parallel
Strand 7	C	121	126	anti-parallel
Strand 8	C	133	135	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	192	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	228	230	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	192	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	234	235	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	257	262	anti-parallel
Strand 4	C	270	272	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	12	first strand
Strand 2	D	22	31	anti-parallel
Strand 3	D	63	71	anti-parallel
Strand 4	D	51	52	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	12	first strand
Strand 2	D	22	31	anti-parallel
Strand 3	D	63	71	anti-parallel
Strand 4	D	56	57	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	37	42	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	92	95	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	31	37	anti-parallel
Strand 3	F	21	28	anti-parallel
Strand 4	F	3	13	anti-parallel
Strand 5	F	93	103	anti-parallel
Strand 6	F	109	118	anti-parallel
Strand 7	F	121	126	anti-parallel
Strand 8	F	133	135	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	192	first strand
Strand 2	F	198	208	anti-parallel
Strand 3	F	241	250	anti-parallel
Strand 4	F	228	230	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	192	first strand
Strand 2	F	198	208	anti-parallel
Strand 3	F	241	250	anti-parallel
Strand 4	F	234	235	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	223	first strand
Strand 2	F	214	219	anti-parallel
Strand 3	F	257	262	anti-parallel
Strand 4	F	270	272	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	12	first strand
Strand 2	H	22	31	anti-parallel
Strand 3	H	63	71	anti-parallel
Strand 4	H	51	52	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	12	first strand
Strand 2	H	22	31	anti-parallel
Strand 3	H	63	71	anti-parallel
Strand 4	H	56	57	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	H	37	42	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	92	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J4S

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4S