Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J4Y entry

There are 8 chains in PDB entry 9J4Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 4	LEU 459
B	SER 6	LEU 458
C	HIS 4	LEU 459
D	SER 6	LEU 459
E	HIS 4	LEU 458
F	SER 5	GLN 456
G	HIS 4	LEU 458
H	HIS 4	LEU 459

There are151 helices in PDB entry 9J4Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	15	Right-handed alpha
Helix 2	AA2	A	21	29	Right-handed alpha
Helix 3	AA3	A	53	58	Right-handed alpha
Helix 4	AA4	A	65	79	Right-handed alpha
Helix 5	AA5	A	90	104	Right-handed alpha
Helix 6	AA6	A	116	135	Right-handed alpha
Helix 7	AA7	A	154	161	Right-handed alpha
Helix 8	AA8	A	163	167	Right-handed 310
Helix 9	AA9	A	184	189	Right-handed alpha
Helix 10	AB1	A	194	214	Right-handed alpha
Helix 11	AB2	A	238	250	Right-handed alpha
Helix 12	AB3	A	270	275	Right-handed alpha
Helix 13	AB4	A	285	289	Right-handed 310
Helix 14	AB5	A	302	316	Right-handed alpha
Helix 15	AB6	A	327	344	Right-handed alpha
Helix 16	AB7	A	345	363	Right-handed alpha
Helix 17	AB8	A	398	411	Right-handed alpha
Helix 18	AB9	A	431	456	Right-handed alpha
Helix 19	AC1	B	7	15	Right-handed alpha
Helix 20	AC2	B	21	29	Right-handed alpha
Helix 21	AC3	B	53	58	Right-handed alpha
Helix 22	AC4	B	65	79	Right-handed alpha
Helix 23	AC5	B	84	86	Right-handed 310
Helix 24	AC6	B	90	104	Right-handed alpha
Helix 25	AC7	B	116	135	Right-handed alpha
Helix 26	AC8	B	154	161	Right-handed alpha
Helix 27	AC9	B	163	167	Right-handed 310
Helix 28	AD1	B	184	189	Right-handed alpha
Helix 29	AD2	B	194	214	Right-handed alpha
Helix 30	AD3	B	238	250	Right-handed alpha
Helix 31	AD4	B	270	275	Right-handed alpha
Helix 32	AD5	B	285	289	Right-handed 310
Helix 33	AD6	B	302	316	Right-handed alpha
Helix 34	AD7	B	327	344	Right-handed alpha
Helix 35	AD8	B	345	363	Right-handed alpha
Helix 36	AD9	B	398	411	Right-handed alpha
Helix 37	AE1	B	431	456	Right-handed alpha
Helix 38	AE2	C	5	15	Right-handed alpha
Helix 39	AE3	C	21	29	Right-handed alpha
Helix 40	AE4	C	53	58	Right-handed alpha
Helix 41	AE5	C	65	79	Right-handed alpha
Helix 42	AE6	C	84	86	Right-handed 310
Helix 43	AE7	C	90	104	Right-handed alpha
Helix 44	AE8	C	116	135	Right-handed alpha
Helix 45	AE9	C	154	161	Right-handed alpha
Helix 46	AF1	C	163	167	Right-handed 310
Helix 47	AF2	C	184	189	Right-handed alpha
Helix 48	AF3	C	194	214	Right-handed alpha
Helix 49	AF4	C	238	250	Right-handed alpha
Helix 50	AF5	C	270	275	Right-handed alpha
Helix 51	AF6	C	287	289	Right-handed 310
Helix 52	AF7	C	302	316	Right-handed alpha
Helix 53	AF8	C	327	344	Right-handed alpha
Helix 54	AF9	C	345	363	Right-handed alpha
Helix 55	AG1	C	398	411	Right-handed alpha
Helix 56	AG2	C	431	456	Right-handed alpha
Helix 57	AG3	D	7	15	Right-handed alpha
Helix 58	AG4	D	21	29	Right-handed alpha
Helix 59	AG5	D	53	58	Right-handed alpha
Helix 60	AG6	D	65	79	Right-handed alpha
Helix 61	AG7	D	84	86	Right-handed 310
Helix 62	AG8	D	90	104	Right-handed alpha
Helix 63	AG9	D	116	135	Right-handed alpha
Helix 64	AH1	D	154	161	Right-handed alpha
Helix 65	AH2	D	163	167	Right-handed 310
Helix 66	AH3	D	184	189	Right-handed alpha
Helix 67	AH4	D	194	214	Right-handed alpha
Helix 68	AH5	D	238	250	Right-handed alpha
Helix 69	AH6	D	270	275	Right-handed alpha
Helix 70	AH7	D	285	289	Right-handed 310
Helix 71	AH8	D	302	316	Right-handed alpha
Helix 72	AH9	D	327	344	Right-handed alpha
Helix 73	AI1	D	345	363	Right-handed alpha
Helix 74	AI2	D	398	411	Right-handed alpha
Helix 75	AI3	D	431	456	Right-handed alpha
Helix 76	AI4	E	5	15	Right-handed alpha
Helix 77	AI5	E	21	29	Right-handed alpha
Helix 78	AI6	E	53	58	Right-handed alpha
Helix 79	AI7	E	65	79	Right-handed alpha
Helix 80	AI8	E	84	86	Right-handed 310
Helix 81	AI9	E	90	104	Right-handed alpha
Helix 82	AJ1	E	116	135	Right-handed alpha
Helix 83	AJ2	E	154	161	Right-handed alpha
Helix 84	AJ3	E	163	167	Right-handed 310
Helix 85	AJ4	E	184	189	Right-handed alpha
Helix 86	AJ5	E	194	214	Right-handed alpha
Helix 87	AJ6	E	238	250	Right-handed alpha
Helix 88	AJ7	E	270	275	Right-handed alpha
Helix 89	AJ8	E	285	289	Right-handed 310
Helix 90	AJ9	E	302	316	Right-handed alpha
Helix 91	AK1	E	327	344	Right-handed alpha
Helix 92	AK2	E	345	363	Right-handed alpha
Helix 93	AK3	E	398	411	Right-handed alpha
Helix 94	AK4	E	431	456	Right-handed alpha
Helix 95	AK5	F	6	15	Right-handed alpha
Helix 96	AK6	F	21	29	Right-handed alpha
Helix 97	AK7	F	53	58	Right-handed alpha
Helix 98	AK8	F	65	79	Right-handed alpha
Helix 99	AK9	F	84	86	Right-handed 310
Helix 100	AL1	F	90	104	Right-handed alpha
Helix 101	AL2	F	116	135	Right-handed alpha
Helix 102	AL3	F	154	161	Right-handed alpha
Helix 103	AL4	F	163	167	Right-handed 310
Helix 104	AL5	F	184	189	Right-handed alpha
Helix 105	AL6	F	194	214	Right-handed alpha
Helix 106	AL7	F	238	250	Right-handed alpha
Helix 107	AL8	F	270	275	Right-handed alpha
Helix 108	AL9	F	285	289	Right-handed 310
Helix 109	AM1	F	302	316	Right-handed alpha
Helix 110	AM2	F	327	344	Right-handed alpha
Helix 111	AM3	F	345	363	Right-handed alpha
Helix 112	AM4	F	398	411	Right-handed alpha
Helix 113	AM5	F	431	456	Right-handed alpha
Helix 114	AM6	G	5	15	Right-handed alpha
Helix 115	AM7	G	21	29	Right-handed alpha
Helix 116	AM8	G	53	58	Right-handed alpha
Helix 117	AM9	G	65	79	Right-handed alpha
Helix 118	AN1	G	84	86	Right-handed 310
Helix 119	AN2	G	90	104	Right-handed alpha
Helix 120	AN3	G	116	135	Right-handed alpha
Helix 121	AN4	G	154	161	Right-handed alpha
Helix 122	AN5	G	163	167	Right-handed 310
Helix 123	AN6	G	184	189	Right-handed alpha
Helix 124	AN7	G	194	214	Right-handed alpha
Helix 125	AN8	G	238	250	Right-handed alpha
Helix 126	AN9	G	270	275	Right-handed alpha
Helix 127	AO1	G	285	289	Right-handed 310
Helix 128	AO2	G	302	316	Right-handed alpha
Helix 129	AO3	G	327	344	Right-handed alpha
Helix 130	AO4	G	345	363	Right-handed alpha
Helix 131	AO5	G	398	411	Right-handed alpha
Helix 132	AO6	G	431	456	Right-handed alpha
Helix 133	AO7	H	5	15	Right-handed alpha
Helix 134	AO8	H	21	29	Right-handed alpha
Helix 135	AO9	H	53	58	Right-handed alpha
Helix 136	AP1	H	65	79	Right-handed alpha
Helix 137	AP2	H	84	86	Right-handed 310
Helix 138	AP3	H	90	104	Right-handed alpha
Helix 139	AP4	H	116	135	Right-handed alpha
Helix 140	AP5	H	154	161	Right-handed alpha
Helix 141	AP6	H	163	167	Right-handed 310
Helix 142	AP7	H	184	189	Right-handed alpha
Helix 143	AP8	H	194	214	Right-handed alpha
Helix 144	AP9	H	238	250	Right-handed alpha
Helix 145	AQ1	H	270	275	Right-handed alpha
Helix 146	AQ2	H	285	289	Right-handed 310
Helix 147	AQ3	H	302	316	Right-handed alpha
Helix 148	AQ4	H	327	344	Right-handed alpha
Helix 149	AQ5	H	345	363	Right-handed alpha
Helix 150	AQ6	H	398	411	Right-handed alpha
Helix 151	AQ7	H	431	456	Right-handed alpha

There are 24 sheets in PDB entry 9J4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	414	first strand
Strand 2	A	48	51	parallel
Strand 3	A	40	43	anti-parallel
Strand 4	A	31	37	anti-parallel
Strand 5	B	88	89	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	B	31	37	parallel
Strand 3	B	40	43	anti-parallel
Strand 4	B	48	51	anti-parallel
Strand 5	B	413	414	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	114	first strand
Strand 2	A	296	301	anti-parallel
Strand 3	A	281	284	anti-parallel
Strand 4	A	253	257	parallel
Strand 5	A	218	223	parallel
Strand 6	A	142	146	parallel
Strand 7	A	177	180	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	376	first strand
Strand 2	A	379	384	anti-parallel
Strand 3	A	421	424	anti-parallel
Strand 4	A	416	418	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	114	first strand
Strand 2	B	296	301	anti-parallel
Strand 3	B	281	284	anti-parallel
Strand 4	B	253	257	parallel
Strand 5	B	218	223	parallel
Strand 6	B	142	146	parallel
Strand 7	B	177	180	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	376	first strand
Strand 2	B	379	384	anti-parallel
Strand 3	B	421	424	anti-parallel
Strand 4	B	416	418	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	414	first strand
Strand 2	C	48	51	parallel
Strand 3	C	40	43	anti-parallel
Strand 4	C	31	37	anti-parallel
Strand 5	D	88	89	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	D	31	37	parallel
Strand 3	D	40	43	anti-parallel
Strand 4	D	48	51	anti-parallel
Strand 5	D	413	414	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	114	first strand
Strand 2	C	296	301	anti-parallel
Strand 3	C	281	285	anti-parallel
Strand 4	C	253	257	parallel
Strand 5	C	218	223	parallel
Strand 6	C	142	146	parallel
Strand 7	C	177	180	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	376	first strand
Strand 2	C	379	384	anti-parallel
Strand 3	C	421	424	anti-parallel
Strand 4	C	416	418	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	114	first strand
Strand 2	D	296	301	anti-parallel
Strand 3	D	281	284	anti-parallel
Strand 4	D	253	257	parallel
Strand 5	D	218	223	parallel
Strand 6	D	142	146	parallel
Strand 7	D	177	180	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	376	first strand
Strand 2	D	379	384	anti-parallel
Strand 3	D	421	424	anti-parallel
Strand 4	D	416	418	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	413	414	first strand
Strand 2	E	48	51	parallel
Strand 3	E	40	43	anti-parallel
Strand 4	E	31	37	anti-parallel
Strand 5	F	88	89	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	89	first strand
Strand 2	F	31	37	parallel
Strand 3	F	40	43	anti-parallel
Strand 4	F	48	51	anti-parallel
Strand 5	F	413	414	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	108	114	first strand
Strand 2	E	296	301	anti-parallel
Strand 3	E	281	284	anti-parallel
Strand 4	E	253	257	parallel
Strand 5	E	218	223	parallel
Strand 6	E	142	146	parallel
Strand 7	E	177	180	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	376	first strand
Strand 2	E	379	384	anti-parallel
Strand 3	E	421	424	anti-parallel
Strand 4	E	416	418	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	114	first strand
Strand 2	F	296	301	anti-parallel
Strand 3	F	281	284	anti-parallel
Strand 4	F	253	257	parallel
Strand 5	F	218	223	parallel
Strand 6	F	142	146	parallel
Strand 7	F	177	180	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	370	376	first strand
Strand 2	F	379	384	anti-parallel
Strand 3	F	421	424	anti-parallel
Strand 4	F	416	418	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	413	414	first strand
Strand 2	G	48	51	parallel
Strand 3	G	40	43	anti-parallel
Strand 4	G	31	37	anti-parallel
Strand 5	H	88	89	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	89	first strand
Strand 2	H	31	37	parallel
Strand 3	H	40	43	anti-parallel
Strand 4	H	48	51	anti-parallel
Strand 5	H	413	414	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	108	114	first strand
Strand 2	G	296	301	anti-parallel
Strand 3	G	281	284	anti-parallel
Strand 4	G	253	257	parallel
Strand 5	G	218	223	parallel
Strand 6	G	142	146	parallel
Strand 7	G	177	180	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	370	376	first strand
Strand 2	G	379	384	anti-parallel
Strand 3	G	421	424	anti-parallel
Strand 4	G	416	418	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	114	first strand
Strand 2	H	296	301	anti-parallel
Strand 3	H	281	284	anti-parallel
Strand 4	H	253	257	parallel
Strand 5	H	218	223	parallel
Strand 6	H	142	146	parallel
Strand 7	H	177	180	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	370	376	first strand
Strand 2	H	379	384	anti-parallel
Strand 3	H	421	424	anti-parallel
Strand 4	H	416	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J4Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4Y