Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J4Z entry

There are 4 chains in PDB entry 9J4Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 34	GLN 453
B	PRO 34	GLN 452
C	PRO 34	GLN 453
D	ILE 36	ALA 451

There are 60 helices in PDB entry 9J4Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	83	Right-handed alpha
Helix 2	AA2	A	95	108	Right-handed alpha
Helix 3	AA3	A	120	139	Right-handed alpha
Helix 4	AA4	A	188	193	Right-handed alpha
Helix 5	AA5	A	197	217	Right-handed alpha
Helix 6	AA6	A	241	251	Right-handed alpha
Helix 7	AA7	A	273	278	Right-handed alpha
Helix 8	AA8	A	290	292	Right-handed 310
Helix 9	AA9	A	305	312	Right-handed alpha
Helix 10	AB1	A	326	343	Right-handed alpha
Helix 11	AB2	A	344	352	Right-handed alpha
Helix 12	AB3	A	352	363	Right-handed alpha
Helix 13	AB4	A	364	367	Right-handed 310
Helix 14	AB5	A	398	410	Right-handed alpha
Helix 15	AB6	A	430	452	Right-handed alpha
Helix 16	AB7	B	69	83	Right-handed alpha
Helix 17	AB8	B	95	108	Right-handed alpha
Helix 18	AB9	B	120	139	Right-handed alpha
Helix 19	AC1	B	187	192	Right-handed alpha
Helix 20	AC2	B	196	216	Right-handed alpha
Helix 21	AC3	B	240	250	Right-handed alpha
Helix 22	AC4	B	272	277	Right-handed alpha
Helix 23	AC5	B	289	291	Right-handed 310
Helix 24	AC6	B	304	310	Right-handed alpha
Helix 25	AC7	B	325	342	Right-handed alpha
Helix 26	AC8	B	343	351	Right-handed alpha
Helix 27	AC9	B	351	362	Right-handed alpha
Helix 28	AD1	B	363	366	Right-handed 310
Helix 29	AD2	B	397	409	Right-handed alpha
Helix 30	AD3	B	429	451	Right-handed alpha
Helix 31	AD4	C	69	83	Right-handed alpha
Helix 32	AD5	C	95	108	Right-handed alpha
Helix 33	AD6	C	120	139	Right-handed alpha
Helix 34	AD7	C	188	193	Right-handed alpha
Helix 35	AD8	C	197	217	Right-handed alpha
Helix 36	AD9	C	241	251	Right-handed alpha
Helix 37	AE1	C	273	278	Right-handed alpha
Helix 38	AE2	C	290	292	Right-handed 310
Helix 39	AE3	C	305	311	Right-handed alpha
Helix 40	AE4	C	326	343	Right-handed alpha
Helix 41	AE5	C	344	352	Right-handed alpha
Helix 42	AE6	C	352	363	Right-handed alpha
Helix 43	AE7	C	364	367	Right-handed 310
Helix 44	AE8	C	398	410	Right-handed alpha
Helix 45	AE9	C	430	452	Right-handed alpha
Helix 46	AF1	D	69	83	Right-handed alpha
Helix 47	AF2	D	95	108	Right-handed alpha
Helix 48	AF3	D	120	139	Right-handed alpha
Helix 49	AF4	D	188	193	Right-handed alpha
Helix 50	AF5	D	197	217	Right-handed alpha
Helix 51	AF6	D	241	251	Right-handed alpha
Helix 52	AF7	D	273	278	Right-handed alpha
Helix 53	AF8	D	290	292	Right-handed 310
Helix 54	AF9	D	305	311	Right-handed alpha
Helix 55	AG1	D	326	343	Right-handed alpha
Helix 56	AG2	D	344	352	Right-handed alpha
Helix 57	AG3	D	352	363	Right-handed alpha
Helix 58	AG4	D	364	367	Right-handed 310
Helix 59	AG5	D	398	410	Right-handed alpha
Helix 60	AG6	D	430	451	Right-handed alpha

There are 12 sheets in PDB entry 9J4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	413	first strand
Strand 2	A	52	55	parallel
Strand 3	A	44	47	anti-parallel
Strand 4	A	35	41	anti-parallel
Strand 5	B	90	91	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	118	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	284	288	anti-parallel
Strand 4	A	256	260	parallel
Strand 5	A	221	226	parallel
Strand 6	A	146	150	parallel
Strand 7	A	181	184	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	374	first strand
Strand 2	A	380	384	anti-parallel
Strand 3	A	420	423	anti-parallel
Strand 4	A	415	417	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	41	first strand
Strand 2	B	44	47	anti-parallel
Strand 3	B	52	55	anti-parallel
Strand 4	B	411	412	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	118	first strand
Strand 2	B	298	303	anti-parallel
Strand 3	B	283	287	anti-parallel
Strand 4	B	255	259	parallel
Strand 5	B	220	225	parallel
Strand 6	B	146	150	parallel
Strand 7	B	180	183	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	373	first strand
Strand 2	B	379	383	anti-parallel
Strand 3	B	419	422	anti-parallel
Strand 4	B	414	416	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	413	first strand
Strand 2	C	52	55	parallel
Strand 3	C	44	47	anti-parallel
Strand 4	C	35	41	anti-parallel
Strand 5	D	90	91	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	118	first strand
Strand 2	C	299	304	anti-parallel
Strand 3	C	284	288	anti-parallel
Strand 4	C	256	260	parallel
Strand 5	C	221	226	parallel
Strand 6	C	146	150	parallel
Strand 7	C	181	184	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	374	first strand
Strand 2	C	380	384	anti-parallel
Strand 3	C	420	423	anti-parallel
Strand 4	C	415	417	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	41	first strand
Strand 2	D	44	47	anti-parallel
Strand 3	D	52	55	anti-parallel
Strand 4	D	412	413	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	118	first strand
Strand 2	D	299	304	anti-parallel
Strand 3	D	284	288	anti-parallel
Strand 4	D	256	260	parallel
Strand 5	D	221	226	parallel
Strand 6	D	146	150	parallel
Strand 7	D	181	184	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	370	374	first strand
Strand 2	D	380	384	anti-parallel
Strand 3	D	420	423	anti-parallel
Strand 4	D	415	417	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J4Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J4Z