Analysis of interatomic Contacts of Structural Units in PDB entry:
9J51


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J51 entry

There are 2 chains in PDB entry 9J51 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 231ARG 624
B
 ALA 229ARG 624
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9J51. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
231 258Right-handed alpha
Helix 2
AA2
A
265 296Right-handed alpha
Helix 3
AA3
A
298 303Right-handed alpha
Helix 4
AA4
A
312 336Right-handed alpha
Helix 5
AA5
A
337 340Right-handed 310
Helix 6
AA6
A
345 360Right-handed alpha
Helix 7
AA7
A
367 383Right-handed alpha
Helix 8
AA8
A
390 403Right-handed alpha
Helix 9
AA9
A
403 420Right-handed alpha
Helix 10
AB1
A
447 471Right-handed alpha
Helix 11
AB2
A
472 502Right-handed alpha
Helix 12
AB3
A
506 532Right-handed alpha
Helix 13
AB4
A
541 545Right-handed 310
Helix 14
AB5
A
556 580Right-handed alpha
Helix 15
AB6
A
589 618Right-handed alpha
Helix 16
AB7
B
230 258Right-handed alpha
Helix 17
AB8
B
265 296Right-handed alpha
Helix 18
AB9
B
312 337Right-handed alpha
Helix 19
AC1
B
346 360Right-handed alpha
Helix 20
AC2
B
367 383Right-handed alpha
Helix 21
AC3
B
384 387Right-handed 310
Helix 22
AC4
B
390 417Right-handed alpha
Helix 23
AC5
B
447 452Right-handed alpha
Helix 24
AC6
B
453 462Right-handed alpha
Helix 25
AC7
B
464 471Right-handed alpha
Helix 26
AC8
B
472 502Right-handed alpha
Helix 27
AC9
B
506 532Right-handed alpha
Helix 28
AD1
B
555 582Right-handed alpha
Helix 29
AD2
B
589 617Right-handed alpha
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There are no sheets in PDB entry 9J51
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il