Analysis of interatomic Contacts of Structural Units in PDB entry:
9J53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J53 entry

There are 2 chains in PDB entry 9J53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ALA 229ARG 624
A
 ALA 229ARG 624
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9J53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
230 257Right-handed alpha
Helix 2
AA2
B
265 295Right-handed alpha
Helix 3
AA3
B
298 303Right-handed alpha
Helix 4
AA4
B
312 336Right-handed alpha
Helix 5
AA5
B
337 340Right-handed 310
Helix 6
AA6
B
345 360Right-handed alpha
Helix 7
AA7
B
367 383Right-handed alpha
Helix 8
AA8
B
390 419Right-handed alpha
Helix 9
AA9
B
447 469Right-handed alpha
Helix 10
AB1
B
475 500Right-handed alpha
Helix 11
AB2
B
506 532Right-handed alpha
Helix 12
AB3
B
556 580Right-handed alpha
Helix 13
AB4
B
589 615Right-handed alpha
Helix 14
AB5
A
230 256Right-handed alpha
Helix 15
AB6
A
265 295Right-handed alpha
Helix 16
AB7
A
300 304Right-handed 310
Helix 17
AB8
A
312 337Right-handed alpha
Helix 18
AB9
A
345 361Right-handed alpha
Helix 19
AC1
A
367 383Right-handed alpha
Helix 20
AC2
A
390 403Right-handed alpha
Helix 21
AC3
A
403 417Right-handed alpha
Helix 22
AC4
A
447 453Right-handed alpha
Helix 23
AC5
A
453 471Right-handed alpha
Helix 24
AC6
A
475 503Right-handed alpha
Helix 25
AC7
A
506 532Right-handed alpha
Helix 26
AC8
A
555 582Right-handed alpha
Helix 27
AC9
A
589 618Right-handed alpha
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There are no sheets in PDB entry 9J53
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il