Analysis of interatomic Contacts of Structural Units in PDB entry:
9J59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J59 entry

There is 1 chain in PDB entry 9J59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9J59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 14Right-handed alpha
Helix 2
AA2
A
23 42Right-handed alpha
Helix 3
AA3
A
93 105Right-handed alpha
Helix 4
AA4
A
122 139Right-handed alpha
Helix 5
AA5
A
140 143Right-handed 310
Helix 6
AA6
A
154 167Right-handed alpha
Helix 7
AA7
A
190 196Right-handed alpha
Helix 8
AA8
A
203 215Right-handed alpha
Helix 9
AA9
A
217 223Right-handed 310
Helix 10
AB1
A
227 231Right-handed 310
Helix 11
AB2
A
250 264Right-handed alpha
Helix 12
AB3
A
279 283Right-handed 310
Helix 13
AB4
A
286 302Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9J59.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 56first strand
Strand 2
A
59 67anti-parallel
Strand 3
A
108 112anti-parallel
Strand 4
A
77 80parallel
Strand 5
A
148 153parallel
Strand 6
A
174 180parallel
Strand 7
A
240 247parallel
Strand 8
A
268 277parallel
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