Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J5I entry

There are 6 chains in PDB entry 9J5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	THR 180	GLY 670
F	LYS 4	ARG 294
D	ALA 12	ASN 582
B	THR 180	GLY 670
C	LYS 4	ARG 294
A	ALA 12	ASN 582

There are150 helices in PDB entry 9J5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	180	188	Right-handed alpha
Helix 2	AA2	E	193	197	Right-handed 310
Helix 3	AA3	E	202	217	Right-handed alpha
Helix 4	AA4	E	218	221	Right-handed 310
Helix 5	AA5	E	223	246	Right-handed alpha
Helix 6	AA6	E	247	249	Right-handed 310
Helix 7	AA7	E	250	269	Right-handed alpha
Helix 8	AA8	E	271	279	Right-handed alpha
Helix 9	AA9	E	287	290	Right-handed 310
Helix 10	AB1	E	291	308	Right-handed alpha
Helix 11	AB2	E	314	323	Right-handed alpha
Helix 12	AB3	E	324	338	Right-handed alpha
Helix 13	AB4	E	341	359	Right-handed alpha
Helix 14	AB5	E	362	370	Right-handed alpha
Helix 15	AB6	E	378	381	Right-handed 310
Helix 16	AB7	E	382	396	Right-handed alpha
Helix 17	AB8	E	406	415	Right-handed alpha
Helix 18	AB9	E	417	431	Right-handed alpha
Helix 19	AC1	E	434	453	Right-handed alpha
Helix 20	AC2	E	455	463	Right-handed alpha
Helix 21	AC3	E	465	469	Right-handed 310
Helix 22	AC4	E	477	492	Right-handed alpha
Helix 23	AC5	E	499	505	Right-handed alpha
Helix 24	AC6	E	508	519	Right-handed alpha
Helix 25	AC7	E	526	543	Right-handed alpha
Helix 26	AC8	E	546	554	Right-handed alpha
Helix 27	AC9	E	566	583	Right-handed alpha
Helix 28	AD1	E	589	598	Right-handed alpha
Helix 29	AD2	E	600	612	Right-handed alpha
Helix 30	AD3	E	616	634	Right-handed alpha
Helix 31	AD4	E	637	646	Right-handed alpha
Helix 32	AD5	E	651	669	Right-handed alpha
Helix 33	AD6	F	5	18	Right-handed alpha
Helix 34	AD7	F	24	42	Right-handed alpha
Helix 35	AD8	F	61	73	Right-handed alpha
Helix 36	AD9	F	92	107	Right-handed alpha
Helix 37	AE1	F	116	120	Right-handed 310
Helix 38	AE2	F	122	127	Right-handed alpha
Helix 39	AE3	F	128	137	Right-handed alpha
Helix 40	AE4	F	140	151	Right-handed alpha
Helix 41	AE5	F	176	183	Right-handed alpha
Helix 42	AE6	F	193	201	Right-handed alpha
Helix 43	AE7	F	221	233	Right-handed alpha
Helix 44	AE8	D	13	19	Right-handed alpha
Helix 45	AE9	D	22	32	Right-handed alpha
Helix 46	AF1	D	32	41	Right-handed alpha
Helix 47	AF2	D	42	56	Right-handed alpha
Helix 48	AF3	D	61	80	Right-handed alpha
Helix 49	AF4	D	87	96	Right-handed alpha
Helix 50	AF5	D	99	121	Right-handed alpha
Helix 51	AF6	D	124	134	Right-handed alpha
Helix 52	AF7	D	140	152	Right-handed alpha
Helix 53	AF8	D	157	173	Right-handed alpha
Helix 54	AF9	D	176	193	Right-handed alpha
Helix 55	AG1	D	195	212	Right-handed alpha
Helix 56	AG2	D	217	230	Right-handed alpha
Helix 57	AG3	D	236	241	Right-handed alpha
Helix 58	AG4	D	241	252	Right-handed alpha
Helix 59	AG5	D	256	272	Right-handed alpha
Helix 60	AG6	D	275	290	Right-handed alpha
Helix 61	AG7	D	293	311	Right-handed alpha
Helix 62	AG8	D	314	330	Right-handed alpha
Helix 63	AG9	D	334	351	Right-handed alpha
Helix 64	AH1	D	352	368	Right-handed alpha
Helix 65	AH2	D	371	387	Right-handed alpha
Helix 66	AH3	D	390	407	Right-handed alpha
Helix 67	AH4	D	411	429	Right-handed alpha
Helix 68	AH5	D	434	445	Right-handed alpha
Helix 69	AH6	D	449	468	Right-handed alpha
Helix 70	AH7	D	468	483	Right-handed alpha
Helix 71	AH8	D	492	506	Right-handed alpha
Helix 72	AH9	D	508	524	Right-handed alpha
Helix 73	AI1	D	527	545	Right-handed alpha
Helix 74	AI2	D	549	563	Right-handed alpha
Helix 75	AI3	D	567	582	Right-handed alpha
Helix 76	AI4	B	181	188	Right-handed alpha
Helix 77	AI5	B	193	197	Right-handed 310
Helix 78	AI6	B	202	217	Right-handed alpha
Helix 79	AI7	B	218	221	Right-handed 310
Helix 80	AI8	B	223	246	Right-handed alpha
Helix 81	AI9	B	247	249	Right-handed 310
Helix 82	AJ1	B	250	269	Right-handed alpha
Helix 83	AJ2	B	271	279	Right-handed alpha
Helix 84	AJ3	B	287	290	Right-handed 310
Helix 85	AJ4	B	291	308	Right-handed alpha
Helix 86	AJ5	B	314	323	Right-handed alpha
Helix 87	AJ6	B	324	338	Right-handed alpha
Helix 88	AJ7	B	341	359	Right-handed alpha
Helix 89	AJ8	B	362	370	Right-handed alpha
Helix 90	AJ9	B	378	381	Right-handed 310
Helix 91	AK1	B	382	396	Right-handed alpha
Helix 92	AK2	B	406	415	Right-handed alpha
Helix 93	AK3	B	417	431	Right-handed alpha
Helix 94	AK4	B	434	453	Right-handed alpha
Helix 95	AK5	B	455	463	Right-handed alpha
Helix 96	AK6	B	465	469	Right-handed 310
Helix 97	AK7	B	477	492	Right-handed alpha
Helix 98	AK8	B	499	505	Right-handed alpha
Helix 99	AK9	B	508	519	Right-handed alpha
Helix 100	AL1	B	526	543	Right-handed alpha
Helix 101	AL2	B	546	554	Right-handed alpha
Helix 102	AL3	B	566	583	Right-handed alpha
Helix 103	AL4	B	589	598	Right-handed alpha
Helix 104	AL5	B	600	612	Right-handed alpha
Helix 105	AL6	B	616	634	Right-handed alpha
Helix 106	AL7	B	637	646	Right-handed alpha
Helix 107	AL8	B	651	669	Right-handed alpha
Helix 108	AL9	C	5	18	Right-handed alpha
Helix 109	AM1	C	24	42	Right-handed alpha
Helix 110	AM2	C	61	73	Right-handed alpha
Helix 111	AM3	C	92	107	Right-handed alpha
Helix 112	AM4	C	116	120	Right-handed 310
Helix 113	AM5	C	122	127	Right-handed alpha
Helix 114	AM6	C	128	137	Right-handed alpha
Helix 115	AM7	C	140	151	Right-handed alpha
Helix 116	AM8	C	176	183	Right-handed alpha
Helix 117	AM9	C	193	201	Right-handed alpha
Helix 118	AN1	C	221	233	Right-handed alpha
Helix 119	AN2	A	13	19	Right-handed alpha
Helix 120	AN3	A	22	32	Right-handed alpha
Helix 121	AN4	A	32	41	Right-handed alpha
Helix 122	AN5	A	42	56	Right-handed alpha
Helix 123	AN6	A	61	80	Right-handed alpha
Helix 124	AN7	A	87	96	Right-handed alpha
Helix 125	AN8	A	99	121	Right-handed alpha
Helix 126	AN9	A	124	134	Right-handed alpha
Helix 127	AO1	A	140	152	Right-handed alpha
Helix 128	AO2	A	157	173	Right-handed alpha
Helix 129	AO3	A	176	193	Right-handed alpha
Helix 130	AO4	A	195	212	Right-handed alpha
Helix 131	AO5	A	217	230	Right-handed alpha
Helix 132	AO6	A	236	241	Right-handed alpha
Helix 133	AO7	A	241	252	Right-handed alpha
Helix 134	AO8	A	256	272	Right-handed alpha
Helix 135	AO9	A	275	289	Right-handed alpha
Helix 136	AP1	A	293	311	Right-handed alpha
Helix 137	AP2	A	314	330	Right-handed alpha
Helix 138	AP3	A	334	351	Right-handed alpha
Helix 139	AP4	A	352	368	Right-handed alpha
Helix 140	AP5	A	371	387	Right-handed alpha
Helix 141	AP6	A	390	407	Right-handed alpha
Helix 142	AP7	A	411	429	Right-handed alpha
Helix 143	AP8	A	434	445	Right-handed alpha
Helix 144	AP9	A	449	468	Right-handed alpha
Helix 145	AQ1	A	468	483	Right-handed alpha
Helix 146	AQ2	A	492	506	Right-handed alpha
Helix 147	AQ3	A	508	524	Right-handed alpha
Helix 148	AQ4	A	527	545	Right-handed alpha
Helix 149	AQ5	A	549	563	Right-handed alpha
Helix 150	AQ6	A	566	582	Right-handed alpha

There are 10 sheets in PDB entry 9J5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	53	54	parallel
Strand 3	F	276	277	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	159	first strand
Strand 2	F	163	165	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	211	first strand
Strand 2	F	218	219	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	249	250	first strand
Strand 2	F	257	258	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	274	first strand
Strand 2	F	288	289	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	53	54	parallel
Strand 3	C	276	277	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	163	165	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	218	219	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	257	258	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	288	289	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5I