Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9J5J entry

There are 8 chains in PDB entry 9J5J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLU 206
B	GLY 2	LYS 231
C	GLN 1	SER 304
D	GLN 1	PRO 483
E	GLN 1	VAL 493
G	PHE 2	ARG 492
H	ILE 2	GLU 206
I	GLY 2	ILE 230

There are 26 helices in PDB entry 9J5J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	33	Right-handed 310
Helix 2	AA2	A	185	189	Right-handed 310
Helix 3	AA3	A	201	206	Right-handed alpha
Helix 4	AA4	B	88	92	Right-handed 310
Helix 5	AA5	B	140	148	Right-handed alpha
Helix 6	AA6	B	200	204	Right-handed 310
Helix 7	AA7	B	217	221	Right-handed 310
Helix 8	AA8	C	210	214	Right-handed 310
Helix 9	AA9	C	217	303	Right-handed alpha
Helix 10	AB1	D	88	92	Right-handed 310
Helix 11	AB2	D	209	214	Right-handed 310
Helix 12	AB3	D	218	290	Right-handed alpha
Helix 13	AB4	D	296	307	Right-handed alpha
Helix 14	AB5	E	88	92	Right-handed 310
Helix 15	AB6	E	221	293	Right-handed alpha
Helix 16	AB7	E	305	309	Right-handed 310
Helix 17	AB8	E	388	392	Right-handed 310
Helix 18	AB9	G	75	79	Right-handed 310
Helix 19	AC1	G	88	92	Right-handed 310
Helix 20	AC2	G	218	230	Right-handed alpha
Helix 21	AC3	G	230	293	Right-handed alpha
Helix 22	AC4	H	185	189	Right-handed 310
Helix 23	AC5	I	88	92	Right-handed 310
Helix 24	AC6	I	141	146	Right-handed alpha
Helix 25	AC7	I	201	205	Right-handed 310
Helix 26	AC8	I	217	221	Right-handed 310

There are 46 sheets in PDB entry 9J5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	19	26	anti-parallel
Strand 3	A	74	79	anti-parallel
Strand 4	A	64	69	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	113	118	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	35	40	anti-parallel
Strand 5	A	47	51	anti-parallel
Strand 6	A	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	113	118	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	107	109	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	137	145	anti-parallel
Strand 3	A	175	183	anti-parallel
Strand 4	A	159	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	134	first strand
Strand 2	A	137	145	anti-parallel
Strand 3	A	175	183	anti-parallel
Strand 4	A	166	169	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	155	first strand
Strand 2	A	190	195	anti-parallel
Strand 3	A	198	200	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	79	85	anti-parallel
Strand 4	B	69	74	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	117	121	parallel
Strand 3	B	93	102	anti-parallel
Strand 4	B	35	40	anti-parallel
Strand 5	B	47	52	anti-parallel
Strand 6	B	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	117	121	parallel
Strand 3	B	93	102	anti-parallel
Strand 4	B	109	113	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	150	157	anti-parallel
Strand 3	B	190	199	anti-parallel
Strand 4	B	180	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	208	213	anti-parallel
Strand 3	B	223	227	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	19	26	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	68	74	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	104	114	parallel
Strand 3	C	93	101	anti-parallel
Strand 4	C	35	40	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	162	first strand
Strand 2	C	173	181	anti-parallel
Strand 3	C	132	142	anti-parallel
Strand 4	C	122	129	anti-parallel
Strand 5	D	200	207	parallel
Strand 6	D	189	195	anti-parallel
Strand 7	D	147	151	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	151	first strand
Strand 2	C	190	195	anti-parallel
Strand 3	C	200	207	anti-parallel
Strand 4	D	122	129	parallel
Strand 5	D	132	142	anti-parallel
Strand 6	D	173	181	anti-parallel
Strand 7	D	161	162	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	151	first strand
Strand 2	C	190	195	anti-parallel
Strand 3	C	200	207	anti-parallel
Strand 4	D	122	129	parallel
Strand 5	D	132	142	anti-parallel
Strand 6	D	173	181	anti-parallel
Strand 7	D	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	80	84	anti-parallel
Strand 4	D	68	71	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	104	114	parallel
Strand 3	D	93	101	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	310	first strand
Strand 2	D	365	371	parallel
Strand 3	D	479	482	anti-parallel
Strand 4	D	332	335	anti-parallel
Strand 5	D	324	326	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	309	310	first strand
Strand 2	D	365	371	parallel
Strand 3	D	430	436	anti-parallel
Strand 4	D	441	446	anti-parallel
Strand 5	D	452	456	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	356	first strand
Strand 2	D	465	470	anti-parallel
Strand 3	D	378	384	anti-parallel
Strand 4	D	401	407	anti-parallel
Strand 5	D	411	414	anti-parallel
Strand 6	D	420	421	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	80	84	anti-parallel
Strand 4	E	68	71	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	14	first strand
Strand 2	E	105	115	parallel
Strand 3	E	94	100	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	48	52	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	129	first strand
Strand 2	E	132	142	anti-parallel
Strand 3	E	173	181	anti-parallel
Strand 4	E	162	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	147	151	anti-parallel
Strand 3	E	188	194	anti-parallel
Strand 4	E	201	207	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	299	first strand
Strand 2	E	357	363	parallel
Strand 3	E	469	471	anti-parallel
Strand 4	E	321	324	anti-parallel
Strand 5	E	313	315	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	299	first strand
Strand 2	E	357	363	parallel
Strand 3	E	421	427	anti-parallel
Strand 4	E	432	437	anti-parallel
Strand 5	E	442	446	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	348	first strand
Strand 2	E	456	462	anti-parallel
Strand 3	E	370	376	anti-parallel
Strand 4	E	394	399	anti-parallel
Strand 5	E	402	403	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	110	115	parallel
Strand 3	G	93	99	anti-parallel
Strand 4	G	36	39	anti-parallel
Strand 5	G	49	50	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	14	first strand
Strand 2	G	110	115	parallel
Strand 3	G	93	99	anti-parallel
Strand 4	G	106	107	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	23	first strand
Strand 2	G	80	84	anti-parallel
Strand 3	G	69	70	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	129	first strand
Strand 2	G	132	139	anti-parallel
Strand 3	G	173	181	anti-parallel
Strand 4	G	162	167	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	151	first strand
Strand 2	G	188	194	anti-parallel
Strand 3	G	201	207	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	313	314	first strand
Strand 2	G	321	324	anti-parallel
Strand 3	G	469	470	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	347	first strand
Strand 2	G	456	461	anti-parallel
Strand 3	G	371	376	anti-parallel
Strand 4	G	393	399	anti-parallel
Strand 5	G	402	404	anti-parallel
Strand 6	G	412	413	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	363	first strand
Strand 2	G	421	427	anti-parallel
Strand 3	G	432	437	anti-parallel
Strand 4	G	442	446	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	116	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	47	51	anti-parallel
Strand 6	H	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	116	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	108	109	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	22	first strand
Strand 2	H	74	77	anti-parallel
Strand 3	H	66	69	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	133	first strand
Strand 2	H	137	145	anti-parallel
Strand 3	H	175	182	anti-parallel
Strand 4	H	166	169	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	5	first strand
Strand 2	I	19	26	anti-parallel
Strand 3	I	79	84	anti-parallel
Strand 4	I	69	74	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	117	122	parallel
Strand 3	I	94	102	anti-parallel
Strand 4	I	35	40	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	117	122	parallel
Strand 3	I	94	102	anti-parallel
Strand 4	I	109	112	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	135	first strand
Strand 2	I	154	159	anti-parallel
Strand 3	I	190	196	anti-parallel
Strand 4	I	180	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	133	135	first strand
Strand 2	I	154	159	anti-parallel
Strand 3	I	190	196	anti-parallel
Strand 4	I	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	165	170	first strand
Strand 2	I	208	213	anti-parallel
Strand 3	I	223	227	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9J5J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5J