Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J5K entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 9J5K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 5ARG 294
B
 THR 180GLY 670
A
 ALA 12ASN 582
X
 ARG 2ALA 3
X
 VAL 5ALA 6
F
 VAL 5ARG 294
E
 THR 180GLY 670
D
 ALA 12ASN 582
Y
 ARG 2ALA 3
Y
 VAL 5ALA 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are152 helices in PDB entry 9J5K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
5 19Right-handed alpha
Helix 2
AA2
C
24 40Right-handed alpha
Helix 3
AA3
C
61 73Right-handed alpha
Helix 4
AA4
C
92 107Right-handed alpha
Helix 5
AA5
C
120 125Right-handed alpha
Helix 6
AA6
C
128 138Right-handed alpha
Helix 7
AA7
C
140 151Right-handed alpha
Helix 8
AA8
C
176 183Right-handed alpha
Helix 9
AA9
C
193 201Right-handed alpha
Helix 10
AB1
C
221 233Right-handed alpha
Helix 11
AB2
C
264 268Right-handed 310
Helix 12
AB3
B
181 188Right-handed alpha
Helix 13
AB4
B
193 197Right-handed 310
Helix 14
AB5
B
202 217Right-handed alpha
Helix 15
AB6
B
218 221Right-handed 310
Helix 16
AB7
B
223 245Right-handed alpha
Helix 17
AB8
B
247 269Right-handed alpha
Helix 18
AB9
B
271 279Right-handed alpha
Helix 19
AC1
B
281 288Right-handed 310
Helix 20
AC2
B
291 308Right-handed alpha
Helix 21
AC3
B
316 323Right-handed alpha
Helix 22
AC4
B
327 338Right-handed alpha
Helix 23
AC5
B
341 359Right-handed alpha
Helix 24
AC6
B
362 370Right-handed alpha
Helix 25
AC7
B
382 396Right-handed alpha
Helix 26
AC8
B
400 404Right-handed 310
Helix 27
AC9
B
408 415Right-handed alpha
Helix 28
AD1
B
417 431Right-handed alpha
Helix 29
AD2
B
434 453Right-handed alpha
Helix 30
AD3
B
455 461Right-handed alpha
Helix 31
AD4
B
471 474Right-handed 310
Helix 32
AD5
B
475 490Right-handed alpha
Helix 33
AD6
B
499 505Right-handed alpha
Helix 34
AD7
B
508 519Right-handed alpha
Helix 35
AD8
B
525 542Right-handed alpha
Helix 36
AD9
B
546 554Right-handed alpha
Helix 37
AE1
B
566 583Right-handed alpha
Helix 38
AE2
B
589 599Right-handed alpha
Helix 39
AE3
B
600 612Right-handed alpha
Helix 40
AE4
B
616 634Right-handed alpha
Helix 41
AE5
B
637 646Right-handed alpha
Helix 42
AE6
B
651 670Right-handed alpha
Helix 43
AE7
A
13 19Right-handed alpha
Helix 44
AE8
A
22 32Right-handed alpha
Helix 45
AE9
A
32 41Right-handed alpha
Helix 46
AF1
A
42 56Right-handed alpha
Helix 47
AF2
A
61 80Right-handed alpha
Helix 48
AF3
A
87 96Right-handed alpha
Helix 49
AF4
A
99 121Right-handed alpha
Helix 50
AF5
A
124 134Right-handed alpha
Helix 51
AF6
A
140 152Right-handed alpha
Helix 52
AF7
A
157 173Right-handed alpha
Helix 53
AF8
A
176 193Right-handed alpha
Helix 54
AF9
A
195 212Right-handed alpha
Helix 55
AG1
A
217 230Right-handed alpha
Helix 56
AG2
A
236 241Right-handed alpha
Helix 57
AG3
A
241 252Right-handed alpha
Helix 58
AG4
A
256 272Right-handed alpha
Helix 59
AG5
A
275 290Right-handed alpha
Helix 60
AG6
A
293 311Right-handed alpha
Helix 61
AG7
A
314 330Right-handed alpha
Helix 62
AG8
A
334 351Right-handed alpha
Helix 63
AG9
A
352 367Right-handed alpha
Helix 64
AH1
A
371 389Right-handed alpha
Helix 65
AH2
A
391 407Right-handed alpha
Helix 66
AH3
A
410 420Right-handed alpha
Helix 67
AH4
A
420 429Right-handed alpha
Helix 68
AH5
A
434 445Right-handed alpha
Helix 69
AH6
A
449 466Right-handed alpha
Helix 70
AH7
A
467 485Right-handed alpha
Helix 71
AH8
A
492 503Right-handed alpha
Helix 72
AH9
A
508 523Right-handed alpha
Helix 73
AI1
A
527 542Right-handed alpha
Helix 74
AI2
A
543 545Right-handed 310
Helix 75
AI3
A
549 563Right-handed alpha
Helix 76
AI4
A
567 582Right-handed alpha
Helix 77
AI5
F
6 19Right-handed alpha
Helix 78
AI6
F
24 40Right-handed alpha
Helix 79
AI7
F
61 73Right-handed alpha
Helix 80
AI8
F
92 107Right-handed alpha
Helix 81
AI9
F
120 125Right-handed alpha
Helix 82
AJ1
F
128 138Right-handed alpha
Helix 83
AJ2
F
140 151Right-handed alpha
Helix 84
AJ3
F
176 183Right-handed alpha
Helix 85
AJ4
F
193 201Right-handed alpha
Helix 86
AJ5
F
221 233Right-handed alpha
Helix 87
AJ6
F
264 268Right-handed 310
Helix 88
AJ7
E
181 188Right-handed alpha
Helix 89
AJ8
E
193 197Right-handed 310
Helix 90
AJ9
E
202 217Right-handed alpha
Helix 91
AK1
E
218 221Right-handed 310
Helix 92
AK2
E
223 245Right-handed alpha
Helix 93
AK3
E
247 269Right-handed alpha
Helix 94
AK4
E
271 279Right-handed alpha
Helix 95
AK5
E
281 288Right-handed 310
Helix 96
AK6
E
291 308Right-handed alpha
Helix 97
AK7
E
316 323Right-handed alpha
Helix 98
AK8
E
327 338Right-handed alpha
Helix 99
AK9
E
341 359Right-handed alpha
Helix 100
AL1
E
362 370Right-handed alpha
Helix 101
AL2
E
382 396Right-handed alpha
Helix 102
AL3
E
400 404Right-handed 310
Helix 103
AL4
E
408 415Right-handed alpha
Helix 104
AL5
E
417 431Right-handed alpha
Helix 105
AL6
E
434 453Right-handed alpha
Helix 106
AL7
E
455 463Right-handed alpha
Helix 107
AL8
E
471 474Right-handed 310
Helix 108
AL9
E
475 490Right-handed alpha
Helix 109
AM1
E
499 505Right-handed alpha
Helix 110
AM2
E
508 519Right-handed alpha
Helix 111
AM3
E
525 542Right-handed alpha
Helix 112
AM4
E
546 554Right-handed alpha
Helix 113
AM5
E
566 583Right-handed alpha
Helix 114
AM6
E
589 599Right-handed alpha
Helix 115
AM7
E
600 612Right-handed alpha
Helix 116
AM8
E
616 634Right-handed alpha
Helix 117
AM9
E
637 646Right-handed alpha
Helix 118
AN1
E
651 670Right-handed alpha
Helix 119
AN2
D
13 19Right-handed alpha
Helix 120
AN3
D
22 32Right-handed alpha
Helix 121
AN4
D
32 41Right-handed alpha
Helix 122
AN5
D
42 56Right-handed alpha
Helix 123
AN6
D
61 80Right-handed alpha
Helix 124
AN7
D
87 96Right-handed alpha
Helix 125
AN8
D
99 121Right-handed alpha
Helix 126
AN9
D
124 134Right-handed alpha
Helix 127
AO1
D
140 152Right-handed alpha
Helix 128
AO2
D
157 173Right-handed alpha
Helix 129
AO3
D
176 193Right-handed alpha
Helix 130
AO4
D
195 212Right-handed alpha
Helix 131
AO5
D
217 230Right-handed alpha
Helix 132
AO6
D
236 241Right-handed alpha
Helix 133
AO7
D
241 252Right-handed alpha
Helix 134
AO8
D
256 272Right-handed alpha
Helix 135
AO9
D
275 290Right-handed alpha
Helix 136
AP1
D
293 311Right-handed alpha
Helix 137
AP2
D
314 330Right-handed alpha
Helix 138
AP3
D
334 351Right-handed alpha
Helix 139
AP4
D
352 367Right-handed alpha
Helix 140
AP5
D
371 389Right-handed alpha
Helix 141
AP6
D
391 407Right-handed alpha
Helix 142
AP7
D
410 420Right-handed alpha
Helix 143
AP8
D
420 429Right-handed alpha
Helix 144
AP9
D
434 445Right-handed alpha
Helix 145
AQ1
D
449 466Right-handed alpha
Helix 146
AQ2
D
467 485Right-handed alpha
Helix 147
AQ3
D
492 503Right-handed alpha
Helix 148
AQ4
D
508 523Right-handed alpha
Helix 149
AQ5
D
527 542Right-handed alpha
Helix 150
AQ6
D
543 545Right-handed 310
Helix 151
AQ7
D
549 563Right-handed alpha
Helix 152
AQ8
D
567 582Right-handed alpha
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There are 6 sheets in PDB entry 9J5K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
248 251anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 113first strand
Strand 2
C
80 82parallel
Strand 3
C
53 55parallel
Strand 4
C
273 277anti-parallel
Strand 5
C
285 289anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
219 220parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
45 48first strand
Strand 2
F
156 159parallel
Strand 3
F
163 166anti-parallel
Strand 4
F
236 239parallel
Strand 5
F
256 259parallel
Strand 6
F
248 251anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
111 113first strand
Strand 2
F
80 82parallel
Strand 3
F
53 55parallel
Strand 4
F
273 277anti-parallel
Strand 5
F
285 289anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
202 203first strand
Strand 2
F
219 220parallel
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