Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J5M entry

There are 8 chains in PDB entry 9J5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2GLU 206
B
 GLY 2LYS 231
C
 GLN 1SER 215
D
 GLN 1SER 215
E
 GLN 1SER 215
G
 PHE 2SER 215
H
 ILE 2GLU 206
I
 GLY 2ILE 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9J5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed alpha
Helix 2
AA2
A
98 102Right-handed 310
Helix 3
AA3
A
185 189Right-handed 310
Helix 4
AA4
A
201 206Right-handed alpha
Helix 5
AA5
B
88 92Right-handed 310
Helix 6
AA6
B
140 145Right-handed alpha
Helix 7
AA7
B
217 221Right-handed 310
Helix 8
AA8
C
88 92Right-handed 310
Helix 9
AA9
C
210 214Right-handed 310
Helix 10
AB1
D
61 65Right-handed 310
Helix 11
AB2
D
209 214Right-handed alpha
Helix 12
AB3
E
61 65Right-handed 310
Helix 13
AB4
G
75 77Right-handed 310
Helix 14
AB5
G
88 92Right-handed 310
Helix 15
AB6
I
88 92Right-handed 310
Helix 16
AB7
I
141 146Right-handed alpha
Helix 17
AB8
I
202 206Right-handed 310
Helix 18
AB9
I
217 221Right-handed 310
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There are 40 sheets in PDB entry 9J5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
74 79anti-parallel
Strand 4
A
64 69anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
113 118parallel
Strand 3
A
88 94anti-parallel
Strand 4
A
35 40anti-parallel
Strand 5
A
47 51anti-parallel
Strand 6
A
55 56anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 134first strand
Strand 2
A
137 145anti-parallel
Strand 3
A
175 182anti-parallel
Strand 4
A
161 162anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 134first strand
Strand 2
A
137 145anti-parallel
Strand 3
A
175 182anti-parallel
Strand 4
A
166 169anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
190 195anti-parallel
Strand 3
A
198 200anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
79 85anti-parallel
Strand 4
B
69 74anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
117 121parallel
Strand 3
B
93 102anti-parallel
Strand 4
B
35 40anti-parallel
Strand 5
B
47 52anti-parallel
Strand 6
B
58 59anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
117 121parallel
Strand 3
B
93 102anti-parallel
Strand 4
B
109 113anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
153 157anti-parallel
Strand 3
B
190 196anti-parallel
Strand 4
B
180 181anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
153 157anti-parallel
Strand 3
B
190 196anti-parallel
Strand 4
B
185 187anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
199 200anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
208 213anti-parallel
Strand 3
B
226 227anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
22 26anti-parallel
Strand 3
C
80 84anti-parallel
Strand 4
C
68 71anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
109 114parallel
Strand 3
C
93 100anti-parallel
Strand 4
C
35 40anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
54 56anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 162first strand
Strand 2
C
177 181anti-parallel
Strand 3
C
132 142anti-parallel
Strand 4
C
173 175anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 162first strand
Strand 2
C
177 181anti-parallel
Strand 3
C
132 142anti-parallel
Strand 4
C
122 129anti-parallel
Strand 5
D
201 207parallel
Strand 6
D
189 194anti-parallel
Strand 7
D
147 151anti-parallel
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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 151first strand
Strand 2
C
189 195anti-parallel
Strand 3
C
200 207anti-parallel
Strand 4
D
121 129parallel
Strand 5
D
132 142anti-parallel
Strand 6
D
173 181anti-parallel
Strand 7
D
161 162anti-parallel
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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 151first strand
Strand 2
C
189 195anti-parallel
Strand 3
C
200 207anti-parallel
Strand 4
D
121 129parallel
Strand 5
D
132 142anti-parallel
Strand 6
D
173 181anti-parallel
Strand 7
D
166 167anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
22 26anti-parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
68 74anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
111 114parallel
Strand 3
D
93 94anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 56first strand
Strand 2
D
46 51anti-parallel
Strand 3
D
35 39anti-parallel
Strand 4
D
97 101anti-parallel
Strand 5
D
104 106anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 5first strand
Strand 2
E
19 26anti-parallel
Strand 3
E
80 84anti-parallel
Strand 4
E
68 71anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 14first strand
Strand 2
E
107 115parallel
Strand 3
E
94 98anti-parallel
Strand 4
E
35 39anti-parallel
Strand 5
E
48 51anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 128first strand
Strand 2
E
133 135anti-parallel
Strand 3
E
173 181anti-parallel
Strand 4
E
138 142anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
125 128first strand
Strand 2
E
133 135anti-parallel
Strand 3
E
173 181anti-parallel
Strand 4
E
162 167anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
157 158first strand
Strand 2
E
147 151anti-parallel
Strand 3
E
191 194anti-parallel
Strand 4
E
201 202anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
4 5first strand
Strand 2
G
19 25anti-parallel
Strand 3
G
79 84anti-parallel
Strand 4
G
69 71anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
11 14first strand
Strand 2
G
107 115parallel
Strand 3
G
93 99anti-parallel
Strand 4
G
36 39anti-parallel
Strand 5
G
48 50anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
122 128first strand
Strand 2
G
133 140anti-parallel
Strand 3
G
173 181anti-parallel
Strand 4
G
162 167anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
147 151first strand
Strand 2
G
188 194anti-parallel
Strand 3
G
201 207anti-parallel
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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 116parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
33 40anti-parallel
Strand 5
H
47 51anti-parallel
Strand 6
H
55 56anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
113 116parallel
Strand 3
H
88 96anti-parallel
Strand 4
H
108 109anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
21 22first strand
Strand 2
H
74 77anti-parallel
Strand 3
H
66 69anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
130 133first strand
Strand 2
H
137 143anti-parallel
Strand 3
H
175 182anti-parallel
Strand 4
H
166 169anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 5first strand
Strand 2
I
19 26anti-parallel
Strand 3
I
79 84anti-parallel
Strand 4
I
69 74anti-parallel
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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 14first strand
Strand 2
I
117 122parallel
Strand 3
I
94 102anti-parallel
Strand 4
I
35 40anti-parallel
Strand 5
I
46 52anti-parallel
Strand 6
I
58 60anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
10 14first strand
Strand 2
I
117 122parallel
Strand 3
I
94 102anti-parallel
Strand 4
I
109 113anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
133 135first strand
Strand 2
I
154 157anti-parallel
Strand 3
I
190 196anti-parallel
Strand 4
I
180 181anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
133 135first strand
Strand 2
I
154 157anti-parallel
Strand 3
I
190 196anti-parallel
Strand 4
I
185 187anti-parallel
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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
165 170first strand
Strand 2
I
208 213anti-parallel
Strand 3
I
223 227anti-parallel
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