Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J5N entry

There are 3 chains in PDB entry 9J5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 161ASP 543
A
 PRO 51ASP 581
C
 LYS 4PRO 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 9J5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
161 177Right-handed alpha
Helix 2
AA2
B
181 189Right-handed alpha
Helix 3
AA3
B
190 200Right-handed 310
Helix 4
AA4
B
201 215Right-handed alpha
Helix 5
AA5
B
224 232Right-handed alpha
Helix 6
AA6
B
233 246Right-handed alpha
Helix 7
AA7
B
250 267Right-handed alpha
Helix 8
AA8
B
271 278Right-handed alpha
Helix 9
AA9
B
292 308Right-handed alpha
Helix 10
AB1
B
316 322Right-handed alpha
Helix 11
AB2
B
327 336Right-handed alpha
Helix 12
AB3
B
338 360Right-handed alpha
Helix 13
AB4
B
362 370Right-handed alpha
Helix 14
AB5
B
371 376Right-handed alpha
Helix 15
AB6
B
384 399Right-handed alpha
Helix 16
AB7
B
409 414Right-handed alpha
Helix 17
AB8
B
417 431Right-handed alpha
Helix 18
AB9
B
434 452Right-handed alpha
Helix 19
AC1
B
455 463Right-handed alpha
Helix 20
AC2
B
478 492Right-handed alpha
Helix 21
AC3
B
500 507Right-handed alpha
Helix 22
AC4
B
508 522Right-handed alpha
Helix 23
AC5
B
525 542Right-handed alpha
Helix 24
AC6
A
60 74Right-handed alpha
Helix 25
AC7
A
83 87Right-handed alpha
Helix 26
AC8
A
88 98Right-handed alpha
Helix 27
AC9
A
99 116Right-handed alpha
Helix 28
AD1
A
121 136Right-handed alpha
Helix 29
AD2
A
140 153Right-handed alpha
Helix 30
AD3
A
160 172Right-handed alpha
Helix 31
AD4
A
179 194Right-handed alpha
Helix 32
AD5
A
201 208Right-handed alpha
Helix 33
AD6
A
215 232Right-handed alpha
Helix 34
AD7
A
235 251Right-handed alpha
Helix 35
AD8
A
255 265Right-handed alpha
Helix 36
AD9
A
266 271Right-handed alpha
Helix 37
AE1
A
273 278Right-handed alpha
Helix 38
AE2
A
281 287Right-handed alpha
Helix 39
AE3
A
297 308Right-handed alpha
Helix 40
AE4
A
314 329Right-handed alpha
Helix 41
AE5
A
333 347Right-handed alpha
Helix 42
AE6
A
351 365Right-handed alpha
Helix 43
AE7
A
366 368Right-handed 310
Helix 44
AE8
A
371 387Right-handed alpha
Helix 45
AE9
A
391 407Right-handed alpha
Helix 46
AF1
A
412 419Right-handed alpha
Helix 47
AF2
A
420 426Right-handed alpha
Helix 48
AF3
A
436 446Right-handed alpha
Helix 49
AF4
A
454 465Right-handed alpha
Helix 50
AF5
A
471 486Right-handed alpha
Helix 51
AF6
A
488 503Right-handed alpha
Helix 52
AF7
A
514 524Right-handed alpha
Helix 53
AF8
A
527 539Right-handed alpha
Helix 54
AF9
A
549 564Right-handed alpha
Helix 55
AG1
A
566 580Right-handed alpha
Helix 56
AG2
C
5 19Right-handed alpha
Helix 57
AG3
C
24 42Right-handed alpha
Helix 58
AG4
C
61 73Right-handed alpha
Helix 59
AG5
C
92 107Right-handed alpha
Helix 60
AG6
C
116 119Right-handed 310
Helix 61
AG7
C
120 125Right-handed alpha
Helix 62
AG8
C
141 153Right-handed alpha
Helix 63
AG9
C
179 183Right-handed alpha
Helix 64
AH1
C
192 201Right-handed alpha
Helix 65
AH2
C
221 233Right-handed alpha
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There are 3 sheets in PDB entry 9J5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 54first strand
Strand 2
C
80 81parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
210 211first strand
Strand 2
C
218 219anti-parallel
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