Analysis of interatomic Contacts of Structural Units in PDB entry:
9J5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9J5R entry

There are 3 chains in PDB entry 9J5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 50ASP 581
B
 THR 180PRO 584
C
 LYS 4PRO 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 9J5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 57Right-handed alpha
Helix 2
AA2
A
61 78Right-handed alpha
Helix 3
AA3
A
80 98Right-handed alpha
Helix 4
AA4
A
99 117Right-handed alpha
Helix 5
AA5
A
118 120Right-handed 310
Helix 6
AA6
A
121 137Right-handed alpha
Helix 7
AA7
A
139 153Right-handed alpha
Helix 8
AA8
A
158 173Right-handed alpha
Helix 9
AA9
A
176 194Right-handed alpha
Helix 10
AB1
A
197 200Right-handed 310
Helix 11
AB2
A
201 212Right-handed alpha
Helix 12
AB3
A
215 233Right-handed alpha
Helix 13
AB4
A
238 251Right-handed alpha
Helix 14
AB5
A
256 270Right-handed alpha
Helix 15
AB6
A
277 291Right-handed alpha
Helix 16
AB7
A
295 300Right-handed alpha
Helix 17
AB8
A
314 329Right-handed alpha
Helix 18
AB9
A
332 346Right-handed alpha
Helix 19
AC1
A
351 369Right-handed alpha
Helix 20
AC2
A
371 381Right-handed alpha
Helix 21
AC3
A
381 388Right-handed alpha
Helix 22
AC4
A
391 407Right-handed alpha
Helix 23
AC5
A
410 425Right-handed alpha
Helix 24
AC6
A
429 437Right-handed alpha
Helix 25
AC7
A
437 446Right-handed alpha
Helix 26
AC8
A
449 467Right-handed alpha
Helix 27
AC9
A
468 486Right-handed alpha
Helix 28
AD1
A
488 503Right-handed alpha
Helix 29
AD2
A
504 506Right-handed 310
Helix 30
AD3
A
507 514Right-handed alpha
Helix 31
AD4
A
514 524Right-handed alpha
Helix 32
AD5
A
527 542Right-handed alpha
Helix 33
AD6
A
543 545Right-handed 310
Helix 34
AD7
A
546 563Right-handed alpha
Helix 35
AD8
A
566 581Right-handed alpha
Helix 36
AD9
B
181 185Right-handed alpha
Helix 37
AE1
B
196 200Right-handed 310
Helix 38
AE2
B
201 217Right-handed alpha
Helix 39
AE3
B
223 232Right-handed alpha
Helix 40
AE4
B
233 246Right-handed alpha
Helix 41
AE5
B
250 268Right-handed alpha
Helix 42
AE6
B
270 280Right-handed alpha
Helix 43
AE7
B
291 308Right-handed alpha
Helix 44
AE8
B
314 323Right-handed alpha
Helix 45
AE9
B
324 338Right-handed alpha
Helix 46
AF1
B
338 359Right-handed alpha
Helix 47
AF2
B
362 370Right-handed alpha
Helix 48
AF3
B
371 376Right-handed alpha
Helix 49
AF4
B
382 398Right-handed alpha
Helix 50
AF5
B
407 413Right-handed alpha
Helix 51
AF6
B
417 430Right-handed alpha
Helix 52
AF7
B
436 453Right-handed alpha
Helix 53
AF8
B
457 462Right-handed alpha
Helix 54
AF9
B
477 492Right-handed alpha
Helix 55
AG1
B
500 507Right-handed alpha
Helix 56
AG2
B
509 522Right-handed alpha
Helix 57
AG3
B
525 543Right-handed alpha
Helix 58
AG4
B
546 554Right-handed alpha
Helix 59
AG5
B
567 582Right-handed alpha
Helix 60
AG6
C
5 20Right-handed alpha
Helix 61
AG7
C
25 42Right-handed alpha
Helix 62
AG8
C
61 73Right-handed alpha
Helix 63
AG9
C
92 108Right-handed alpha
Helix 64
AH1
C
116 120Right-handed 310
Helix 65
AH2
C
122 128Right-handed alpha
Helix 66
AH3
C
128 137Right-handed alpha
Helix 67
AH4
C
140 152Right-handed alpha
Helix 68
AH5
C
177 183Right-handed alpha
Helix 69
AH6
C
192 200Right-handed alpha
Helix 70
AH7
C
221 232Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9J5R.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 164anti-parallel
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